| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200807
Identifier: 87200807
GI number: 87200807
Start: 3017505
End: 3018956
Strand: Reverse
Name: 87200807
Synonym: Saro_2794
Alternate gene names: NA
Gene position: 3018956-3017505 (Counterclockwise)
Preceding gene: 87200808
Following gene: 87200806
Centisome position: 84.76
GC content: 62.4
Gene sequence:
>1452_bases ATGAACACAACTTCCTTCCCGCTTGTACGCAAGATGGCGATAGATGTCCGCGCCATCGATCTGGCCATCATCCTGGCGGT GACCTTTGCCTGCCGGATCTGGTGGTTTCATTCGCCCGTGCTCGATTACGACGAGCAGCTCTATTCGTACATCGGGCAGC AGATGCTGGCGGGCAAGCTGCCCTATGTCGACATATGGGACAGGAAGCCCATCGGGCTGTTCCTGATCTTTGCAGCCAGC CATGCCCTGCTGGGCGCGTCGATTGCGGCCTATCTCTTCGTTGCGGCGCTGTTTTCGGCGGGTGGGGCATGGATCGTGTA CCGCATCGCGGGCGACTTTGCCGGTCGCGAAACGGGCCTCGTTGCAGGACTTCTCTATACCATAGGCATGTTCGCGTTCG GTTGCATGGGCGCACAGGCGGAAGTTTTCATGACTGTGCCGTGCCTTGCCATGGCGCGACTGCTGCTGACGCGGGCGGAT TCCAGAGGCGCGATGGCGCTCGCGATGCTGCTGGGCGGCCTTGCCATCCAGATCAAGACCAGCGCTGCCCCGTTCTGCGT GGTATTCGGCTTGCTGGTGCTGTGGACGCGGTGGCGACTTCACCGCGATCCGGTGGCACTCGCGGGGGAAGTGCTGCTGT ATGGCATCCTCGGGCTGCTGCCCACGGTTGCGGTTGCAGCCTTTTACGCGATGGTCGGGCACTTCGATGCCTTCTTCTAC GCCAACTTCCTTTCGGTGTTCGAGCGACCTGCCGTGATCGGTCGCTGGCATCCCATGACGCTGATCATCATGGGCACGGT CTTCCTGACCGCTCTGGTCGGAATCTGGGCGTTCCTGCGAACCGGCCGCAGCTATGACGGGGGCAGGTATGCGGTGTTCA TGGCGCTGGCGGTCGGCGCCCTGGCAAGCATCTATGCCACCGCCAATGTCCTGGTCCACTACTATGCGTTTCTGGTGCCC TGGGCGGTTCTGCTGGCCACGCCCTTCTACGACATGCGCGTCCCCATCGGACGCCTTTGTGCCGGATGGTTGCTGGCAGG CTATCTCCTTGCCGCCAACCACCCAAAGCGGCTGGCCGAAACGCATGCGGGCGAGATCGTGTTCAATCGCTTCGTCGGCG AAATCACCAGCGAGGGGCCGGGGCAGGGGCTCTACGTCTTTGCGGGGGCTTTCGGCTTCTATCCGGCGACTGGCAACGAC GGGGGACGTTATCCCTATCCCTCGCACCACAGCAACGCGCTGGAGCGGGCGGGGCTTGGCATTTCGCAGGAAGCGCTGGC CAAGCAGGCGCTGGCCAGGAAGCCGAAGTTCATCATTTCGCTGAAGCTGTATGAAGCATCCCGGGGACGGGGCTCCGTTG GACTCGTGCGCGAGGCGTTGAGATCGCATTACCGTCCGATCGATCAGGGCACCGTGATGGGCGACGATCTGGTGCTTTAC AGACGGCGCTGA
Upstream 100 bases:
>100_bases GGCCTGGTCCGGGATATGGTTAAGCATTTCGCAAAGGCTGCGCGGTAGATCCATCCGGCACGGCGGGGAGCGACCCTGCC GAAGGAGCACCGGCGCGGCG
Downstream 100 bases:
>100_bases GCGGTGTTGCGCGGTTGGCGCGGCATGTCGACAATCCCCGGAAAATCCGCCCGCCCTCCGCAATTGCGGGGGATCGCGCG GCTCTGCGACTTTCGCTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 483; Mature: 483
Protein sequence:
>483_residues MNTTSFPLVRKMAIDVRAIDLAIILAVTFACRIWWFHSPVLDYDEQLYSYIGQQMLAGKLPYVDIWDRKPIGLFLIFAAS HALLGASIAAYLFVAALFSAGGAWIVYRIAGDFAGRETGLVAGLLYTIGMFAFGCMGAQAEVFMTVPCLAMARLLLTRAD SRGAMALAMLLGGLAIQIKTSAAPFCVVFGLLVLWTRWRLHRDPVALAGEVLLYGILGLLPTVAVAAFYAMVGHFDAFFY ANFLSVFERPAVIGRWHPMTLIIMGTVFLTALVGIWAFLRTGRSYDGGRYAVFMALAVGALASIYATANVLVHYYAFLVP WAVLLATPFYDMRVPIGRLCAGWLLAGYLLAANHPKRLAETHAGEIVFNRFVGEITSEGPGQGLYVFAGAFGFYPATGND GGRYPYPSHHSNALERAGLGISQEALAKQALARKPKFIISLKLYEASRGRGSVGLVREALRSHYRPIDQGTVMGDDLVLY RRR
Sequences:
>Translated_483_residues MNTTSFPLVRKMAIDVRAIDLAIILAVTFACRIWWFHSPVLDYDEQLYSYIGQQMLAGKLPYVDIWDRKPIGLFLIFAAS HALLGASIAAYLFVAALFSAGGAWIVYRIAGDFAGRETGLVAGLLYTIGMFAFGCMGAQAEVFMTVPCLAMARLLLTRAD SRGAMALAMLLGGLAIQIKTSAAPFCVVFGLLVLWTRWRLHRDPVALAGEVLLYGILGLLPTVAVAAFYAMVGHFDAFFY ANFLSVFERPAVIGRWHPMTLIIMGTVFLTALVGIWAFLRTGRSYDGGRYAVFMALAVGALASIYATANVLVHYYAFLVP WAVLLATPFYDMRVPIGRLCAGWLLAGYLLAANHPKRLAETHAGEIVFNRFVGEITSEGPGQGLYVFAGAFGFYPATGND GGRYPYPSHHSNALERAGLGISQEALAKQALARKPKFIISLKLYEASRGRGSVGLVREALRSHYRPIDQGTVMGDDLVLY RRR >Mature_483_residues MNTTSFPLVRKMAIDVRAIDLAIILAVTFACRIWWFHSPVLDYDEQLYSYIGQQMLAGKLPYVDIWDRKPIGLFLIFAAS HALLGASIAAYLFVAALFSAGGAWIVYRIAGDFAGRETGLVAGLLYTIGMFAFGCMGAQAEVFMTVPCLAMARLLLTRAD SRGAMALAMLLGGLAIQIKTSAAPFCVVFGLLVLWTRWRLHRDPVALAGEVLLYGILGLLPTVAVAAFYAMVGHFDAFFY ANFLSVFERPAVIGRWHPMTLIIMGTVFLTALVGIWAFLRTGRSYDGGRYAVFMALAVGALASIYATANVLVHYYAFLVP WAVLLATPFYDMRVPIGRLCAGWLLAGYLLAANHPKRLAETHAGEIVFNRFVGEITSEGPGQGLYVFAGAFGFYPATGND GGRYPYPSHHSNALERAGLGISQEALAKQALARKPKFIISLKLYEASRGRGSVGLVREALRSHYRPIDQGTVMGDDLVLY RRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52843; Mature: 52843
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTTSFPLVRKMAIDVRAIDLAIILAVTFACRIWWFHSPVLDYDEQLYSYIGQQMLAGKL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC PYVDIWDRKPIGLFLIFAASHALLGASIAAYLFVAALFSAGGAWIVYRIAGDFAGRETGL CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHH VAGLLYTIGMFAFGCMGAQAEVFMTVPCLAMARLLLTRADSRGAMALAMLLGGLAIQIKT HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEEEC SAAPFCVVFGLLVLWTRWRLHRDPVALAGEVLLYGILGLLPTVAVAAFYAMVGHFDAFFY CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANFLSVFERPAVIGRWHPMTLIIMGTVFLTALVGIWAFLRTGRSYDGGRYAVFMALAVGA HHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH LASIYATANVLVHYYAFLVPWAVLLATPFYDMRVPIGRLCAGWLLAGYLLAANHPKRLAE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHH THAGEIVFNRFVGEITSEGPGQGLYVFAGAFGFYPATGNDGGRYPYPSHHSNALERAGLG HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC ISQEALAKQALARKPKFIISLKLYEASRGRGSVGLVREALRSHYRPIDQGTVMGDDLVLY CCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEE RRR ECC >Mature Secondary Structure MNTTSFPLVRKMAIDVRAIDLAIILAVTFACRIWWFHSPVLDYDEQLYSYIGQQMLAGKL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC PYVDIWDRKPIGLFLIFAASHALLGASIAAYLFVAALFSAGGAWIVYRIAGDFAGRETGL CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHH VAGLLYTIGMFAFGCMGAQAEVFMTVPCLAMARLLLTRADSRGAMALAMLLGGLAIQIKT HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEEEC SAAPFCVVFGLLVLWTRWRLHRDPVALAGEVLLYGILGLLPTVAVAAFYAMVGHFDAFFY CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANFLSVFERPAVIGRWHPMTLIIMGTVFLTALVGIWAFLRTGRSYDGGRYAVFMALAVGA HHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH LASIYATANVLVHYYAFLVPWAVLLATPFYDMRVPIGRLCAGWLLAGYLLAANHPKRLAE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHH THAGEIVFNRFVGEITSEGPGQGLYVFAGAFGFYPATGNDGGRYPYPSHHSNALERAGLG HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC ISQEALAKQALARKPKFIISLKLYEASRGRGSVGLVREALRSHYRPIDQGTVMGDDLVLY CCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEE RRR ECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA