| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200769
Identifier: 87200769
GI number: 87200769
Start: 2977809
End: 2978849
Strand: Reverse
Name: 87200769
Synonym: Saro_2756
Alternate gene names: NA
Gene position: 2978849-2977809 (Counterclockwise)
Preceding gene: 87200770
Following gene: 87200768
Centisome position: 83.64
GC content: 66.19
Gene sequence:
>1041_bases ATGGCAAAGCAGCCCGATTCTCTGACTATCCTCGCACTGCGCGCATTGCAGGATCTGGAGCAGCGCGCCCACATCGGAAC CGTCGAGCTGACCCAATCTGACCGCGTGGCGCTGGAATGGCTTGTCCGTGCGGGCGTGGCACAGCGTTGGCAGGTGCGGA ACCTCATCTCTGCGCTGACCGCTCCGATCTCGAACCCGATCCACGCCAGCGGCGACCACTACATGCGCGCGACGGCCGCA ACGACTGCGCTGGAGGCGTGGCACCATATCGCTGGCGTCGAGCGCCAGGATTGCATCCGCCGCGCCATCGCAGCCCGGCG GTATTGCGTCGAGATGCTTGACCCGGAGGATCAGCAACCCCAGCCTTGGCATATGTGCAACCGCTACCGCCCCGGTGATC GCCACATGATCACGCAGCTCTTCGCGGCGTCGCCGGCACGGCCGTTCAACGACGGTCCGCCGATCGTCCACCCGCGCGAG CCGGGCTTTGTCGTCCGCCGCGATCATCATGGCGCGCTGGTGCTGGACCAGATGACATGGGGCTTCCCCGTGATCCTGAA CGGCAAGCGAGGTCAGCCACTCAAACCGAAGCCGGTCAACAATGCCCGGTTCGACAAGCTCGACAAGTTCTGGGGCCGGT GGTCGCGCGTCCCGGCACAACGCTGCCTGGTGCCGACAGCGCACTACGCCGAGGCGGAAGGTCCATCGGGCGAGATGCGC ACCACATGGCTGTCGCTCAAGAGCACGCCGGTGTTCGCCTGGGCAGGCCTGTGGGCGACGCACGAGGACTGGGGGCCGGT CTATACCTGCGTGATGACCGACAACGCGCCCGAGCTGGCCGACATCCACGATCGCAGCCCGGTTATTCTTGCGCCGGAGG ACTGGGAAGCGTGGCTTACCGCGCCGCTCGAGGAGTTGCGCCGCTTCGACCGGCCGTGGCCTGCGTCGGATACGAACATT GTCCGCACACCTGTTCCATGGAGCAAGGGTGGCCGGGAGGATGCCTATCTGGGGGCATTGCCGTCGGCGCCTTGGCTGTA G
Upstream 100 bases:
>100_bases GCGCCATCCGAACGCGGAGGCCGCCCATGACCACCCCTGATACACCGCACAGTCAGTAGCCAAAGCTTGACCTAAGTTCT TCATCTGTTCCACTGCGCAG
Downstream 100 bases:
>100_bases GGCATTGATCTTGTGCCATTTAGGAACAACTCGTCGGTAATTCCGCGGGGCTCATTCGTGGTTTGAATCTGCCATAGGGA CGGACGTCGGAGCCATAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MAKQPDSLTILALRALQDLEQRAHIGTVELTQSDRVALEWLVRAGVAQRWQVRNLISALTAPISNPIHASGDHYMRATAA TTALEAWHHIAGVERQDCIRRAIAARRYCVEMLDPEDQQPQPWHMCNRYRPGDRHMITQLFAASPARPFNDGPPIVHPRE PGFVVRRDHHGALVLDQMTWGFPVILNGKRGQPLKPKPVNNARFDKLDKFWGRWSRVPAQRCLVPTAHYAEAEGPSGEMR TTWLSLKSTPVFAWAGLWATHEDWGPVYTCVMTDNAPELADIHDRSPVILAPEDWEAWLTAPLEELRRFDRPWPASDTNI VRTPVPWSKGGREDAYLGALPSAPWL
Sequences:
>Translated_346_residues MAKQPDSLTILALRALQDLEQRAHIGTVELTQSDRVALEWLVRAGVAQRWQVRNLISALTAPISNPIHASGDHYMRATAA TTALEAWHHIAGVERQDCIRRAIAARRYCVEMLDPEDQQPQPWHMCNRYRPGDRHMITQLFAASPARPFNDGPPIVHPRE PGFVVRRDHHGALVLDQMTWGFPVILNGKRGQPLKPKPVNNARFDKLDKFWGRWSRVPAQRCLVPTAHYAEAEGPSGEMR TTWLSLKSTPVFAWAGLWATHEDWGPVYTCVMTDNAPELADIHDRSPVILAPEDWEAWLTAPLEELRRFDRPWPASDTNI VRTPVPWSKGGREDAYLGALPSAPWL >Mature_345_residues AKQPDSLTILALRALQDLEQRAHIGTVELTQSDRVALEWLVRAGVAQRWQVRNLISALTAPISNPIHASGDHYMRATAAT TALEAWHHIAGVERQDCIRRAIAARRYCVEMLDPEDQQPQPWHMCNRYRPGDRHMITQLFAASPARPFNDGPPIVHPREP GFVVRRDHHGALVLDQMTWGFPVILNGKRGQPLKPKPVNNARFDKLDKFWGRWSRVPAQRCLVPTAHYAEAEGPSGEMRT TWLSLKSTPVFAWAGLWATHEDWGPVYTCVMTDNAPELADIHDRSPVILAPEDWEAWLTAPLEELRRFDRPWPASDTNIV RTPVPWSKGGREDAYLGALPSAPWL
Specific function: Unknown
COG id: COG2135
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39167; Mature: 39036
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKQPDSLTILALRALQDLEQRAHIGTVELTQSDRVALEWLVRAGVAQRWQVRNLISALT CCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH APISNPIHASGDHYMRATAATTALEAWHHIAGVERQDCIRRAIAARRYCVEMLDPEDQQP HHCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC QPWHMCNRYRPGDRHMITQLFAASPARPFNDGPPIVHPREPGFVVRRDHHGALVLDQMTW CCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCC GFPVILNGKRGQPLKPKPVNNARFDKLDKFWGRWSRVPAQRCLVPTAHYAEAEGPSGEMR CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCHHCCCCCCCCCEE TTWLSLKSTPVFAWAGLWATHEDWGPVYTCVMTDNAPELADIHDRSPVILAPEDWEAWLT EEEEEECCCCEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCEEECCCCCHHHHH APLEELRRFDRPWPASDTNIVRTPVPWSKGGREDAYLGALPSAPWL HHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCC >Mature Secondary Structure AKQPDSLTILALRALQDLEQRAHIGTVELTQSDRVALEWLVRAGVAQRWQVRNLISALT CCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH APISNPIHASGDHYMRATAATTALEAWHHIAGVERQDCIRRAIAARRYCVEMLDPEDQQP HHCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC QPWHMCNRYRPGDRHMITQLFAASPARPFNDGPPIVHPREPGFVVRRDHHGALVLDQMTW CCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCC GFPVILNGKRGQPLKPKPVNNARFDKLDKFWGRWSRVPAQRCLVPTAHYAEAEGPSGEMR CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCHHCCCCCCCCCEE TTWLSLKSTPVFAWAGLWATHEDWGPVYTCVMTDNAPELADIHDRSPVILAPEDWEAWLT EEEEEECCCCEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCEEECCCCCHHHHH APLEELRRFDRPWPASDTNIVRTPVPWSKGGREDAYLGALPSAPWL HHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA