| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200737
Identifier: 87200737
GI number: 87200737
Start: 2955037
End: 2956128
Strand: Direct
Name: 87200737
Synonym: Saro_2724
Alternate gene names: NA
Gene position: 2955037-2956128 (Clockwise)
Preceding gene: 87200736
Following gene: 87200738
Centisome position: 82.97
GC content: 63.19
Gene sequence:
>1092_bases ATGACCGCACTTTCGTTCTTCGACCGCGCTTCGGGCCAGATCACTGACCCCGGCGCATTCATGCTGGCTGATGCCGCGAC CAAGAAGCAGGTCATCGCGCTGTGGGCAAACGACAACGCCCGCCATGCCGCGACCTTCGCTGACAAGGTCGATGCGTTCC TTCAGGACGCCCAGGTCGGTTATGCCTTCCTGACGCCCCAGCTTCACCGCATCGAGGCCGAGGTCTACATGACCCGGTAT CCCTCGTTCGACATCAGCCGTTTCATGACGGTCGATACCTCGGGCGACATGTGGGATGTCGGCACCGTCGTCTATTCCAT GGACAATGTCGGCCAGGCTGAATTCATGGGCGGCGGCGCTTTCGACATGCCCTACGCTTCGACCCAGATGAACCAGGCCA CGCGCAACTTCCATCTCGCCGCGATCGGCTACGAGTGGAACACGCAGGAAATGCAGCGCGCCGCCAAGCTCGGTCGCTCG CTCTCGTCTGACAAGGCGCAGGGTGCGGTTCTGGCTGCCGACCGCTTCATCTACGGCATTGCCATGACCGGCAAGACGCC ACGCGGTGAAAGCGAAAAGGGCTGGACCGGCTTCATCAACAACGGTTCAGCGCCCTCCGCGCAGGTCGCGGCGGATGGCA CTGGCTCCTCGCGCCTCTGGGCGGACAAGACGCCCGACCTGATCCTGCGTGACATCAATGCTGCGCTTACCGCTGTCGAG ACTGGCACGGGCGAGACGCACATCGCCAATACGCTGGCCCTTCCAACGTCGCGCTACAACTACATCGCGACGACCCGCGT CGGCGACACCAACGCGACGATCCTGTCGTTCCTGCTGGCAAACAACGTGGCTGGCGAGGCTCTGACGATCCTCAAGAGCC GCGAACTCGAAACGGCCGGCACCGGCTCGACCACGCGCATGATCGCCTACGACAACAACCCGCAGGTTCTCAAGTTCATG CTGCCTGGCGCGCACCAGTTCCTGCCCGCGTTCCAGAAGTCCAGCCTCGTCTACGAGGTCGGCGGCATCATGAACGTCGG CGGCTGCGACGTCCGCCTGCCCAAGGCGATCGTCTACCGCGACAGCTTCTGA
Upstream 100 bases:
>100_bases ACAGCAGCCGACGCAACCCACATCGCGACGGGTTGGGTCGCGGACGAAACTGTCACCGACGGCCTGTGCCGCATCGTGAA GCGCTAAGGGGACTGAAACA
Downstream 100 bases:
>100_bases GGAGCGCTGACATGGCACAGGTCAAGAACATCAGCACTGGCCCGCGTGGCGCCTATCTCAAGGGCGCCTACGTGGAGGCC GAGGTGGGCGCGGTCATCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MTALSFFDRASGQITDPGAFMLADAATKKQVIALWANDNARHAATFADKVDAFLQDAQVGYAFLTPQLHRIEAEVYMTRY PSFDISRFMTVDTSGDMWDVGTVVYSMDNVGQAEFMGGGAFDMPYASTQMNQATRNFHLAAIGYEWNTQEMQRAAKLGRS LSSDKAQGAVLAADRFIYGIAMTGKTPRGESEKGWTGFINNGSAPSAQVAADGTGSSRLWADKTPDLILRDINAALTAVE TGTGETHIANTLALPTSRYNYIATTRVGDTNATILSFLLANNVAGEALTILKSRELETAGTGSTTRMIAYDNNPQVLKFM LPGAHQFLPAFQKSSLVYEVGGIMNVGGCDVRLPKAIVYRDSF
Sequences:
>Translated_363_residues MTALSFFDRASGQITDPGAFMLADAATKKQVIALWANDNARHAATFADKVDAFLQDAQVGYAFLTPQLHRIEAEVYMTRY PSFDISRFMTVDTSGDMWDVGTVVYSMDNVGQAEFMGGGAFDMPYASTQMNQATRNFHLAAIGYEWNTQEMQRAAKLGRS LSSDKAQGAVLAADRFIYGIAMTGKTPRGESEKGWTGFINNGSAPSAQVAADGTGSSRLWADKTPDLILRDINAALTAVE TGTGETHIANTLALPTSRYNYIATTRVGDTNATILSFLLANNVAGEALTILKSRELETAGTGSTTRMIAYDNNPQVLKFM LPGAHQFLPAFQKSSLVYEVGGIMNVGGCDVRLPKAIVYRDSF >Mature_362_residues TALSFFDRASGQITDPGAFMLADAATKKQVIALWANDNARHAATFADKVDAFLQDAQVGYAFLTPQLHRIEAEVYMTRYP SFDISRFMTVDTSGDMWDVGTVVYSMDNVGQAEFMGGGAFDMPYASTQMNQATRNFHLAAIGYEWNTQEMQRAAKLGRSL SSDKAQGAVLAADRFIYGIAMTGKTPRGESEKGWTGFINNGSAPSAQVAADGTGSSRLWADKTPDLILRDINAALTAVET GTGETHIANTLALPTSRYNYIATTRVGDTNATILSFLLANNVAGEALTILKSRELETAGTGSTTRMIAYDNNPQVLKFML PGAHQFLPAFQKSSLVYEVGGIMNVGGCDVRLPKAIVYRDSF
Specific function: Unknown
COG id: COG4834
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39249; Mature: 39117
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALSFFDRASGQITDPGAFMLADAATKKQVIALWANDNARHAATFADKVDAFLQDAQVG CCCCHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC YAFLTPQLHRIEAEVYMTRYPSFDISRFMTVDTSGDMWDVGTVVYSMDNVGQAEFMGGGA EEEECCCCEEEEEEEEEEECCCCCCEEEEEECCCCCEEECCEEEEECCCCCCEEEECCCC FDMPYASTQMNQATRNFHLAAIGYEWNTQEMQRAAKLGRSLSSDKAQGAVLAADRFIYGI CCCCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEECEEEEEE AMTGKTPRGESEKGWTGFINNGSAPSAQVAADGTGSSRLWADKTPDLILRDINAALTAVE EEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCEECCCCHHHHHHHHHHHEEEEE TGTGETHIANTLALPTSRYNYIATTRVGDTNATILSFLLANNVAGEALTILKSRELETAG CCCCCCEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCHHEEEECCCCCCCCC TGSTTRMIAYDNNPQVLKFMLPGAHQFLPAFQKSSLVYEVGGIMNVGGCDVRLPKAIVYR CCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCEEEEECCEEECCCCCEECCEEEEEE DSF CCC >Mature Secondary Structure TALSFFDRASGQITDPGAFMLADAATKKQVIALWANDNARHAATFADKVDAFLQDAQVG CCCHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC YAFLTPQLHRIEAEVYMTRYPSFDISRFMTVDTSGDMWDVGTVVYSMDNVGQAEFMGGGA EEEECCCCEEEEEEEEEEECCCCCCEEEEEECCCCCEEECCEEEEECCCCCCEEEECCCC FDMPYASTQMNQATRNFHLAAIGYEWNTQEMQRAAKLGRSLSSDKAQGAVLAADRFIYGI CCCCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEECEEEEEE AMTGKTPRGESEKGWTGFINNGSAPSAQVAADGTGSSRLWADKTPDLILRDINAALTAVE EEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCEECCCCHHHHHHHHHHHEEEEE TGTGETHIANTLALPTSRYNYIATTRVGDTNATILSFLLANNVAGEALTILKSRELETAG CCCCCCEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCHHEEEECCCCCCCCC TGSTTRMIAYDNNPQVLKFMLPGAHQFLPAFQKSSLVYEVGGIMNVGGCDVRLPKAIVYR CCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCEEEEECCEEECCCCCEECCEEEEEE DSF CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA