| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200725
Identifier: 87200725
GI number: 87200725
Start: 2945335
End: 2946594
Strand: Direct
Name: 87200725
Synonym: Saro_2712
Alternate gene names: NA
Gene position: 2945335-2946594 (Clockwise)
Preceding gene: 87200724
Following gene: 87200726
Centisome position: 82.7
GC content: 64.37
Gene sequence:
>1260_bases GTGAGCGTGTCGGACGCAGGCAACTTTGACGCAAACGACGTCGCCGTCACCTTCGGCATCGACAAGGTGCGCGAGGCGTT CGAGCAGCGCCGTAGCACCCTGCCACCGTTCGCGCCGTATGACGAGGAGCCGGAATCCGAGCGCCCCAAGCTCAAGGCGA CCCCGTTCTCGTGGCGCGACCCGGCGACGATCCCGCCGCGCAAGTGGCTCTATGGGCGGCATCTGATCCGCAAGTTTCTT TCGCTCGACATCGCTCCTGGCGGTCTCGGCAAGTCGAGCGTGAAGATCGTCGAGGCCCTTGCGATGACAACGGGCCGCAA CCTTCTCGGCAAGGACTGCCACGAGGGCCCGCTCAACGTCTGGCTCTACAACCTCGAGGATCCGGCGGAGGAAACCGAAC GCCGCATCCACGCCGCAGCGCAGTGGTTTGAGATCGGCCCCGACGATGTGGGCGAGCGCCTGTTCGTCGATTCCGGCCGT GAGCAGCCGATCTGCATCGCGGAGGAAACCGACGGCGGTGCGCGCATCGTTCGGCCGGTCGTCGAAGCGGTGATCGAACA GTTGAAAGACCGCCGGATCGACGTCCTCAGCATCGACCCGTTCGTCTCCAGCCACGCGATCAGCGAAAACGACAACCGCG CGATCGACATGGTGGCGAAAGAGTGGTCGCGCATCGCCGACATCTGCGATTGCGCCATCAACCTGGTTCACCACGTCCGC AAGACGAACGGCGCGGAAGTAACCGCGGAAAGCAGCCGCGGCGCCGTCTCGCTGATCGGTGCGGCACGTAGCGTCGTGGT CTACAACCGCATGACCAAGGAGGAAGGAGAGCGCGCCGGCATCGAACCGCGCCAGCTCGGTTTCTACTTCCGCACCCAGA ACGACAAGGCGAACCTTGCACCGCCCGAAGCGGCGGACTGGTTCCGCATGAACAACGTCGACCTGCCCAACGGCGACAGC GTCGGCGTGGCATGTCCGTGGCAATGGCCCGACCCCTTTGATGGCGTCAGCACCTGGCACCTCAAGGAGGTCCAGAAGCG GGTGTCGCAGGGCCGCTATCGCGCCGACGTCCGGAGCGCCCAGTGGGTCGGCCACGTGATCGCCAATGTCCTCGATATCG ACCTCGAGAAGAAGGCTGGAAGGGTCAAGGACATCCTCAAGCAGTGGCTCAAGAACGACATGCTGCGCGAGGTCGAGGGA ACGGACGAGAAGCGCAACGTCCGCAAGTTCGTGGAGGTCGGAACATGGCACACGGACTGA
Upstream 100 bases:
>100_bases GCATCTACAAGAATCCCGGGATCGAGACCGCCGAAGCCGTTGCTGCCGAGATCGGAGCGCACGTTGCCTATCCGCTGGGT CGGCCGCAGAGGGGGGCAGC
Downstream 100 bases:
>100_bases ACTGGGGCACAACCGTGGCAACTGTGGCAGGGGAAGCAGGCCGTCTGTCTGACGCGCCCCACTGCGACAATCGAAACGGC GGAAATCTGCGGTTTTTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MSVSDAGNFDANDVAVTFGIDKVREAFEQRRSTLPPFAPYDEEPESERPKLKATPFSWRDPATIPPRKWLYGRHLIRKFL SLDIAPGGLGKSSVKIVEALAMTTGRNLLGKDCHEGPLNVWLYNLEDPAEETERRIHAAAQWFEIGPDDVGERLFVDSGR EQPICIAEETDGGARIVRPVVEAVIEQLKDRRIDVLSIDPFVSSHAISENDNRAIDMVAKEWSRIADICDCAINLVHHVR KTNGAEVTAESSRGAVSLIGAARSVVVYNRMTKEEGERAGIEPRQLGFYFRTQNDKANLAPPEAADWFRMNNVDLPNGDS VGVACPWQWPDPFDGVSTWHLKEVQKRVSQGRYRADVRSAQWVGHVIANVLDIDLEKKAGRVKDILKQWLKNDMLREVEG TDEKRNVRKFVEVGTWHTD
Sequences:
>Translated_419_residues MSVSDAGNFDANDVAVTFGIDKVREAFEQRRSTLPPFAPYDEEPESERPKLKATPFSWRDPATIPPRKWLYGRHLIRKFL SLDIAPGGLGKSSVKIVEALAMTTGRNLLGKDCHEGPLNVWLYNLEDPAEETERRIHAAAQWFEIGPDDVGERLFVDSGR EQPICIAEETDGGARIVRPVVEAVIEQLKDRRIDVLSIDPFVSSHAISENDNRAIDMVAKEWSRIADICDCAINLVHHVR KTNGAEVTAESSRGAVSLIGAARSVVVYNRMTKEEGERAGIEPRQLGFYFRTQNDKANLAPPEAADWFRMNNVDLPNGDS VGVACPWQWPDPFDGVSTWHLKEVQKRVSQGRYRADVRSAQWVGHVIANVLDIDLEKKAGRVKDILKQWLKNDMLREVEG TDEKRNVRKFVEVGTWHTD >Mature_418_residues SVSDAGNFDANDVAVTFGIDKVREAFEQRRSTLPPFAPYDEEPESERPKLKATPFSWRDPATIPPRKWLYGRHLIRKFLS LDIAPGGLGKSSVKIVEALAMTTGRNLLGKDCHEGPLNVWLYNLEDPAEETERRIHAAAQWFEIGPDDVGERLFVDSGRE QPICIAEETDGGARIVRPVVEAVIEQLKDRRIDVLSIDPFVSSHAISENDNRAIDMVAKEWSRIADICDCAINLVHHVRK TNGAEVTAESSRGAVSLIGAARSVVVYNRMTKEEGERAGIEPRQLGFYFRTQNDKANLAPPEAADWFRMNNVDLPNGDSV GVACPWQWPDPFDGVSTWHLKEVQKRVSQGRYRADVRSAQWVGHVIANVLDIDLEKKAGRVKDILKQWLKNDMLREVEGT DEKRNVRKFVEVGTWHTD
Specific function: Unknown
COG id: COG3598
COG function: function code L; RecA-family ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47187; Mature: 47055
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSDAGNFDANDVAVTFGIDKVREAFEQRRSTLPPFAPYDEEPESERPKLKATPFSWRD CCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCC PATIPPRKWLYGRHLIRKFLSLDIAPGGLGKSSVKIVEALAMTTGRNLLGKDCHEGPLNV CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCEE WLYNLEDPAEETERRIHAAAQWFEIGPDDVGERLFVDSGREQPICIAEETDGGARIVRPV EEECCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEECCCCCCCCEEEEECCCCCHHHHHHH VEAVIEQLKDRRIDVLSIDPFVSSHAISENDNRAIDMVAKEWSRIADICDCAINLVHHVR HHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTNGAEVTAESSRGAVSLIGAARSVVVYNRMTKEEGERAGIEPRQLGFYFRTQNDKANLA HCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCCC PPEAADWFRMNNVDLPNGDSVGVACPWQWPDPFDGVSTWHLKEVQKRVSQGRYRADVRSA CCCCHHHEECCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH QWVGHVIANVLDIDLEKKAGRVKDILKQWLKNDMLREVEGTDEKRNVRKFVEVGTWHTD HHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure SVSDAGNFDANDVAVTFGIDKVREAFEQRRSTLPPFAPYDEEPESERPKLKATPFSWRD CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCC PATIPPRKWLYGRHLIRKFLSLDIAPGGLGKSSVKIVEALAMTTGRNLLGKDCHEGPLNV CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCEE WLYNLEDPAEETERRIHAAAQWFEIGPDDVGERLFVDSGREQPICIAEETDGGARIVRPV EEECCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEECCCCCCCCEEEEECCCCCHHHHHHH VEAVIEQLKDRRIDVLSIDPFVSSHAISENDNRAIDMVAKEWSRIADICDCAINLVHHVR HHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTNGAEVTAESSRGAVSLIGAARSVVVYNRMTKEEGERAGIEPRQLGFYFRTQNDKANLA HCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCCC PPEAADWFRMNNVDLPNGDSVGVACPWQWPDPFDGVSTWHLKEVQKRVSQGRYRADVRSA CCCCHHHEECCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH QWVGHVIANVLDIDLEKKAGRVKDILKQWLKNDMLREVEGTDEKRNVRKFVEVGTWHTD HHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA