| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200660
Identifier: 87200660
GI number: 87200660
Start: 2883943
End: 2884677
Strand: Reverse
Name: 87200660
Synonym: Saro_2647
Alternate gene names: NA
Gene position: 2884677-2883943 (Counterclockwise)
Preceding gene: 87200661
Following gene: 87200657
Centisome position: 80.99
GC content: 66.8
Gene sequence:
>735_bases GTGATCGGGCGATGGATCTTTGTTCGCGAGCGGGTCTTCTCGCGGCGCGGCAGGATTGCGCTCGCGATGCTTGTCGCCCT GGCGCTCGTCGTACTTCTCCCGCTGCGGCTGGTGCTTGGGTTGGTCGCCCCGGAAGGCGTCACGGCGCGATCCGTCGAGG GGCCGGTCTGGAGCGGACGAATTGCGGAACTCAGGGCCGGACCGTTGCCAATCGGCACTGTCGATGCCGGAGCCGATGCG CTGCCGCTTATCCTCGGCAGGGTGGGCTTCCGGCTTTCACGCGAAGGTGCAACCCCGTTTTCGGCGAAGGCATCGCTGGG TCTTGGCGGTTACCGGCTCGCCGATGTGAACGGGACGGTCGCCTTGCCCGACGGACTGGGCACCCTTCCCGTGACCCAGA TCGGATTTGGCGACTTCAATTTGCGAATTGCCGATGGCAGTTGCGTCGATGCGGGCGGCTCGATGAGCCTTACGCTGGCG CCGCCCGGGTCGCTGCTGCCCGGTACTATCGCGCTGTCGGGCAAGGCTCGATGCCAGCGAGGGGCGCTGGTCGTGCCGAT GCAGGGACCGGAGGGAATGGAACGCTTCACCCTTCGCTTGAACGCTGACGGCCGTTGGGAGGGAGACCTGGTGTTGATGG GCCTTCCCGCCGAAACGGCAGGGCCGCTGATGCAGGCAGGATTTGCCGCTCGTCCCGGTGGCGGTCTGGGCCTCAGGACG AGCGGCGCCTTCTGA
Upstream 100 bases:
>100_bases ACGGGCTGATGGCGCAGGGACTGGCGGTCGAGCAACTGACCATGACACCCGCGCCGGACGGCAGCGTCTCGGTCAACGTC ACCTTGCGACGGAGCGGATC
Downstream 100 bases:
>100_bases AATTCAGGCCAGCGTCTGGGTAAGGAACCACACGCGCTGCTGAGCCTGGTCGGTCCAGTCGTCGGCCATGCCTTCGGTCG CGTTGTCGCCGGCCTCGCCA
Product: type II secretion system protein N
Products: NA
Alternate protein names: Type II Secretory Pathway Component PulN
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MIGRWIFVRERVFSRRGRIALAMLVALALVVLLPLRLVLGLVAPEGVTARSVEGPVWSGRIAELRAGPLPIGTVDAGADA LPLILGRVGFRLSREGATPFSAKASLGLGGYRLADVNGTVALPDGLGTLPVTQIGFGDFNLRIADGSCVDAGGSMSLTLA PPGSLLPGTIALSGKARCQRGALVVPMQGPEGMERFTLRLNADGRWEGDLVLMGLPAETAGPLMQAGFAARPGGGLGLRT SGAF
Sequences:
>Translated_244_residues MIGRWIFVRERVFSRRGRIALAMLVALALVVLLPLRLVLGLVAPEGVTARSVEGPVWSGRIAELRAGPLPIGTVDAGADA LPLILGRVGFRLSREGATPFSAKASLGLGGYRLADVNGTVALPDGLGTLPVTQIGFGDFNLRIADGSCVDAGGSMSLTLA PPGSLLPGTIALSGKARCQRGALVVPMQGPEGMERFTLRLNADGRWEGDLVLMGLPAETAGPLMQAGFAARPGGGLGLRT SGAF >Mature_244_residues MIGRWIFVRERVFSRRGRIALAMLVALALVVLLPLRLVLGLVAPEGVTARSVEGPVWSGRIAELRAGPLPIGTVDAGADA LPLILGRVGFRLSREGATPFSAKASLGLGGYRLADVNGTVALPDGLGTLPVTQIGFGDFNLRIADGSCVDAGGSMSLTLA PPGSLLPGTIALSGKARCQRGALVVPMQGPEGMERFTLRLNADGRWEGDLVLMGLPAETAGPLMQAGFAARPGGGLGLRT SGAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25118; Mature: 25118
Theoretical pI: Translated: 11.08; Mature: 11.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGRWIFVRERVFSRRGRIALAMLVALALVVLLPLRLVLGLVAPEGVTARSVEGPVWSGR CCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE IAELRAGPLPIGTVDAGADALPLILGRVGFRLSREGATPFSAKASLGLGGYRLADVNGTV EHEEECCCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEEEECCCCE ALPDGLGTLPVTQIGFGDFNLRIADGSCVDAGGSMSLTLAPPGSLLPGTIALSGKARCQR ECCCCCCCCCEEEECCCCEEEEEECCCEECCCCCEEEEECCCCCCCCCEEEECCCCCCCC GALVVPMQGPEGMERFTLRLNADGRWEGDLVLMGLPAETAGPLMQAGFAARPGGGLGLRT CCEEEECCCCCCCEEEEEEECCCCCCCCCEEEEECCCHHCCHHHHCCCCCCCCCCCCCCC SGAF CCCC >Mature Secondary Structure MIGRWIFVRERVFSRRGRIALAMLVALALVVLLPLRLVLGLVAPEGVTARSVEGPVWSGR CCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE IAELRAGPLPIGTVDAGADALPLILGRVGFRLSREGATPFSAKASLGLGGYRLADVNGTV EHEEECCCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEEEECCCCE ALPDGLGTLPVTQIGFGDFNLRIADGSCVDAGGSMSLTLAPPGSLLPGTIALSGKARCQR ECCCCCCCCCEEEECCCCEEEEEECCCEECCCCCEEEEECCCCCCCCCEEEECCCCCCCC GALVVPMQGPEGMERFTLRLNADGRWEGDLVLMGLPAETAGPLMQAGFAARPGGGLGLRT CCEEEECCCCCCCEEEEEEECCCCCCCCCEEEEECCCHHCCHHHHCCCCCCCCCCCCCCC SGAF CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA