Click here to switch to the map view.

The map label for this gene is ompR [H]

Identifier: 87200632

GI number: 87200632

Start: 2833398

End: 2834120

Strand: Reverse

Name: ompR [H]

Synonym: Saro_2619

Alternate gene names: 87200632

Gene position: 2834120-2833398 (Counterclockwise)

Preceding gene: 87200633

Following gene: 87200631

Centisome position: 79.57

GC content: 66.8

Gene sequence:

>723_bases
ATGCAATCTCCCTCGATCGTACTGGTTGAAGATGACGGGCCGCTGCGCACGCTGACCGCACGCGCGCTGCGCGAGAACGG
CTACACCGTCCGCACTGCCGCAACCGGCGCCGAAATGTGGGTCGCGCTGGAAAGCGAGCCTGCCGATCTGGTCGTGCTCG
ACATCATGCTGCCTGGCACCAGCGGCATCGAACTGTTCCGCCGCCTTCGCCGGCAGAGCGACGTACCCATCATCTTCGTT
TCCGCTCGCGGCAGCGAAGAGGATCGCGTACTCGGTCTCGAACTTGGCGCCGACGATTACCTGCCAAAGCCCTTCAGCAC
GCGCGAACTGGTCGCCCGCATCGGCGCAGTCCTGCGGCGCGGCCAAGTGAACGGCACCGACACGTCCGGCGATACGGGCA
GCCGCAGCGGCGACATCCGCTTCGAAGGCTGGACCGTCTCGATGGCGCGGCGCGAACTCCATTCGCCGAGCGGCGCGATG
GTCGACCTGACCGGAGCGGAGTTCGATCTCCTCGCGACGTTCATCAGCCAGCCCCAGCGCGTACTTGGCCGCGAGCGATT
GATAGAGCTCTCTCGCACCCGGCTGGGCGACAGCTCGGATCGCAGCGTCGACGTCCTCGTCAGCCGCCTCCGCCGCAAGC
TGTCCGCTGCGGGGGGCAATGCACCGATCGTCACGGTGCGCGGCGTTGGCTATATGTTCAGGGCCGAGGTCGCGCGCAGT
TGA

Upstream 100 bases:

>100_bases
GTCTTCGACGTTCACGGCGGGCAGAGCTGACCTTCAACCTTGGCAGCGCGCGCGTGGGAACCTATCTTGCTCGCCGCTGC
CGCAATTCTTCCGGGATCTC

Downstream 100 bases:

>100_bases
CCTTCCTGCGCAGGTCCGGACTGCCCGAGCGGCTGCTGGCGATCCTGCTGCTGGTCGCTGGCGTGGATTTCGCCGCGAAT
ACCCTGCTGTTTGACCGCGC

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MQSPSIVLVEDDGPLRTLTARALRENGYTVRTAATGAEMWVALESEPADLVVLDIMLPGTSGIELFRRLRRQSDVPIIFV
SARGSEEDRVLGLELGADDYLPKPFSTRELVARIGAVLRRGQVNGTDTSGDTGSRSGDIRFEGWTVSMARRELHSPSGAM
VDLTGAEFDLLATFISQPQRVLGRERLIELSRTRLGDSSDRSVDVLVSRLRRKLSAAGGNAPIVTVRGVGYMFRAEVARS

Sequences:

>Translated_240_residues
MQSPSIVLVEDDGPLRTLTARALRENGYTVRTAATGAEMWVALESEPADLVVLDIMLPGTSGIELFRRLRRQSDVPIIFV
SARGSEEDRVLGLELGADDYLPKPFSTRELVARIGAVLRRGQVNGTDTSGDTGSRSGDIRFEGWTVSMARRELHSPSGAM
VDLTGAEFDLLATFISQPQRVLGRERLIELSRTRLGDSSDRSVDVLVSRLRRKLSAAGGNAPIVTVRGVGYMFRAEVARS
>Mature_240_residues
MQSPSIVLVEDDGPLRTLTARALRENGYTVRTAATGAEMWVALESEPADLVVLDIMLPGTSGIELFRRLRRQSDVPIIFV
SARGSEEDRVLGLELGADDYLPKPFSTRELVARIGAVLRRGQVNGTDTSGDTGSRSGDIRFEGWTVSMARRELHSPSGAM
VDLTGAEFDLLATFISQPQRVLGRERLIELSRTRLGDSSDRSVDVLVSRLRRKLSAAGGNAPIVTVRGVGYMFRAEVARS

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=231, Percent_Identity=42.8571428571429, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1788394, Length=239, Percent_Identity=38.9121338912134, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1790863, Length=234, Percent_Identity=35.8974358974359, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1786599, Length=231, Percent_Identity=37.6623376623377, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1787229, Length=235, Percent_Identity=37.8723404255319, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI2367329, Length=230, Percent_Identity=40.4347826086956, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1790860, Length=242, Percent_Identity=33.8842975206612, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1786784, Length=230, Percent_Identity=35.2173913043478, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787375, Length=229, Percent_Identity=31.8777292576419, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87082012, Length=233, Percent_Identity=34.7639484978541, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786911, Length=230, Percent_Identity=33.0434782608696, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=33.920704845815, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790552, Length=232, Percent_Identity=33.1896551724138, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=31.7796610169492, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790299, Length=155, Percent_Identity=32.9032258064516, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26172; Mature: 26172

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSPSIVLVEDDGPLRTLTARALRENGYTVRTAATGAEMWVALESEPADLVVLDIMLPGT
CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCEEEEEEEECCC
SGIELFRRLRRQSDVPIIFVSARGSEEDRVLGLELGADDYLPKPFSTRELVARIGAVLRR
CHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHC
GQVNGTDTSGDTGSRSGDIRFEGWTVSMARRELHSPSGAMVDLTGAEFDLLATFISQPQR
CCCCCCCCCCCCCCCCCCEEEECEEHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCHHH
VLGRERLIELSRTRLGDSSDRSVDVLVSRLRRKLSAAGGNAPIVTVRGVGYMFRAEVARS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEHHHHHCC
>Mature Secondary Structure
MQSPSIVLVEDDGPLRTLTARALRENGYTVRTAATGAEMWVALESEPADLVVLDIMLPGT
CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCEEEEEEEECCC
SGIELFRRLRRQSDVPIIFVSARGSEEDRVLGLELGADDYLPKPFSTRELVARIGAVLRR
CHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHC
GQVNGTDTSGDTGSRSGDIRFEGWTVSMARRELHSPSGAMVDLTGAEFDLLATFISQPQR
CCCCCCCCCCCCCCCCCCEEEECEEHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCHHH
VLGRERLIELSRTRLGDSSDRSVDVLVSRLRRKLSAAGGNAPIVTVRGVGYMFRAEVARS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]