| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200531
Identifier: 87200531
GI number: 87200531
Start: 2721893
End: 2722678
Strand: Reverse
Name: 87200531
Synonym: Saro_2518
Alternate gene names: NA
Gene position: 2722678-2721893 (Counterclockwise)
Preceding gene: 87200532
Following gene: 87200530
Centisome position: 76.45
GC content: 65.78
Gene sequence:
>786_bases ATGGAAACCCATGATATCGAGCCGGAAAACTGGCTGGCCAAGACGACGCCGGCGGCAACTGTCGTCATTTTCAGGCGCGA TCCGGAAGGCGGCGCGGCGCAGCTGCTGATGGTGGAGCGCAATGCCAGCCTGAAGTTCGCTGGGGGTGCCACCGTTTTTC CCGGCGGCAAGATCGATCCTGCCGACCGCGAACTGGCTACCCGCCTGGGTGGCGAGATCGAGGACATGGCCGCGCGCGTT GCCGCCGTTCGCGAGACGCTGGAGGAAACGGGGCTGGTCATCGGCATCGAAGGCGCGGTCGATGGCGCGATCGCGGCCGA GGCGCGGAGGATGCTCATTTCGGGTGGCGATCTTGCGCCCGTTCTCGATGCCTATGGCTGGCGACTGGTGCCCGACCAGC TGGTGCCGTTCGCGCGCTGGTGGCCAAAGCACCGTACTGAAAGAATTTTCGACACCCGTTTCTATCTTGCTGACCTTGGC ACCGGCGCGGTCGACATCGAAGTGGACGCGACCGAGAACCGGCATCTGTTCTGGGCCAGCGCCAAGGGCGCGCTCGATCT CGCGGCAGAGCGGAAGATCAAGGTCATCTTCCCGACCCGGCGCAACCTGGAGCGCCTGGCGCAGTTCGAGACCTTCGAGG AAGCGCGGGCCCACGCCGAGGCGACCCCGGTCGGCACGATCAGCCCCTACGTCGAGCAACGCGACGGCGAACACTGGCTG ATGATCCCGGACGATCTCGGTTATCCGGTGCGCGGAGAGCCGCTGGAGATGGCGCAACGGGGCTGA
Upstream 100 bases:
>100_bases GGCCATTCGATGCTGAATGCCGGGAGGGCGGGTTGTAAAGCAAACCGACAAGATCTGCGGGCTTGGCAATCGGACCCTGG CCGGACATGATGGATGCGTG
Downstream 100 bases:
>100_bases GCGCTTCGCACAGTTACTTATGGTCTGCTGATGAGGGCTTGATAGACTCTCGGGCATGACGACCGCGAGGTGTCGCATGT CCGGATCGCAAGCCCCTACC
Product: NUDIX hydrolase
Products: NA
Alternate protein names: Beta-Lactamase Domain-Containing Protein; Beta-Lactamase-Like Protein; NUDIX Family Hydrolase; Beta-Lactamase-Like; Beta-Lactamase Domain Protein; NUDIX HydrolaseBeta-Lactamase-Like; Nudix Superfamily Hydrolase; NUDIX Family Protein
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues METHDIEPENWLAKTTPAATVVIFRRDPEGGAAQLLMVERNASLKFAGGATVFPGGKIDPADRELATRLGGEIEDMAARV AAVRETLEETGLVIGIEGAVDGAIAAEARRMLISGGDLAPVLDAYGWRLVPDQLVPFARWWPKHRTERIFDTRFYLADLG TGAVDIEVDATENRHLFWASAKGALDLAAERKIKVIFPTRRNLERLAQFETFEEARAHAEATPVGTISPYVEQRDGEHWL MIPDDLGYPVRGEPLEMAQRG
Sequences:
>Translated_261_residues METHDIEPENWLAKTTPAATVVIFRRDPEGGAAQLLMVERNASLKFAGGATVFPGGKIDPADRELATRLGGEIEDMAARV AAVRETLEETGLVIGIEGAVDGAIAAEARRMLISGGDLAPVLDAYGWRLVPDQLVPFARWWPKHRTERIFDTRFYLADLG TGAVDIEVDATENRHLFWASAKGALDLAAERKIKVIFPTRRNLERLAQFETFEEARAHAEATPVGTISPYVEQRDGEHWL MIPDDLGYPVRGEPLEMAQRG >Mature_261_residues METHDIEPENWLAKTTPAATVVIFRRDPEGGAAQLLMVERNASLKFAGGATVFPGGKIDPADRELATRLGGEIEDMAARV AAVRETLEETGLVIGIEGAVDGAIAAEARRMLISGGDLAPVLDAYGWRLVPDQLVPFARWWPKHRTERIFDTRFYLADLG TGAVDIEVDATENRHLFWASAKGALDLAAERKIKVIFPTRRNLERLAQFETFEEARAHAEATPVGTISPYVEQRDGEHWL MIPDDLGYPVRGEPLEMAQRG
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28799; Mature: 28799
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METHDIEPENWLAKTTPAATVVIFRRDPEGGAAQLLMVERNASLKFAGGATVFPGGKIDP CCCCCCCCCCCEECCCCCEEEEEEEECCCCCCEEEEEEECCCCEEECCCEEECCCCCCCC ADRELATRLGGEIEDMAARVAAVRETLEETGLVIGIEGAVDGAIAAEARRMLISGGDLAP CHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHEECCCCCHH VLDAYGWRLVPDQLVPFARWWPKHRTERIFDTRFYLADLGTGAVDIEVDATENRHLFWAS HHHHCCCEECHHHHCCHHHHCCCHHHHHHHHHEEEEEECCCCEEEEEEECCCCCEEEEEE AKGALDLAAERKIKVIFPTRRNLERLAQFETFEEARAHAEATPVGTISPYVEQRDGEHWL CCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEE MIPDDLGYPVRGEPLEMAQRG ECCCCCCCCCCCCHHHHHCCC >Mature Secondary Structure METHDIEPENWLAKTTPAATVVIFRRDPEGGAAQLLMVERNASLKFAGGATVFPGGKIDP CCCCCCCCCCCEECCCCCEEEEEEEECCCCCCEEEEEEECCCCEEECCCEEECCCCCCCC ADRELATRLGGEIEDMAARVAAVRETLEETGLVIGIEGAVDGAIAAEARRMLISGGDLAP CHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHEECCCCCHH VLDAYGWRLVPDQLVPFARWWPKHRTERIFDTRFYLADLGTGAVDIEVDATENRHLFWAS HHHHCCCEECHHHHCCHHHHCCCHHHHHHHHHEEEEEECCCCEEEEEEECCCCCEEEEEE AKGALDLAAERKIKVIFPTRRNLERLAQFETFEEARAHAEATPVGTISPYVEQRDGEHWL CCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEE MIPDDLGYPVRGEPLEMAQRG ECCCCCCCCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA