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The map label for this gene is ywhC [H]

Identifier: 87200498

GI number: 87200498

Start: 2687106

End: 2687813

Strand: Reverse

Name: ywhC [H]

Synonym: Saro_2485

Alternate gene names: 87200498

Gene position: 2687813-2687106 (Counterclockwise)

Preceding gene: 87200499

Following gene: 87200497

Centisome position: 75.47

GC content: 64.83

Gene sequence:

>708_bases
GTGAATCCGGAAGGTCTCCTGTGGCAGGTCGCGACGATCGCGATTCCCATGATCCTTGCCATCGTGTTCCATGAAGTTGC
CCACGGCTGGACGGCGCGGGCGCTTGGCGATCCCACGGCGGCGGAACAGCGGCGGTTGAGTCTCAACCCCTTGCGTCACG
TCGATCCGTTCGGGACGATCATCCTGCCCGGCCTGCTGAAGTTGACCGGCGCGCCGGTGTTCGGTTGGGCGAAGCCGGTT
CCGGTCAATTTCAACCGCTTGCGCAATCCGCGCTGGGGAATGGTCGCCGTGGCGGCGGCGGGGCCGGCGATGAACTTCGT
TCTGGCGACGCTTTCCGCAATCGCGCTTGGCCTGCTGGTCAGGGCGACGGATCTGGGCGGAGAGCCGGGGCTGGGCGTGC
TGTTCCTTTCGGACAACCTGCGCAACTTCCTGATCGTGAACCTTTTCCTTGGCGCGTTCAACTTGCTGCCGATCCCCCCG
TTCGACGGTTCGCGGATCGTCATGGGCGTGCTTCCCGCGCCGCTGGCGAGGGGATATGCCCGGATCGAGCCTTTCGGTCT
GCTCGTGGTCTTTGGACTTCTCGTTATTCTTCCGTATCTTGCGCCGAACCTTCATCTCGTGGAGCGGCTGATCGGCCCGC
CGGTCGACTGGCTGGGACAGCAGCTCGCCAATCTCGCGGTGGCGGTTGCCGGGCCGGAGCCGATCTGA

Upstream 100 bases:

>100_bases
AAGGCGTGATGCGCCACGAACGCCGGACCTGGACGGGGCGTTTGCGCGATACCGTGCTGTTCTCGATCCTGCGCGAGGAA
TGGCTGGGGGGAGAAGGCGC

Downstream 100 bases:

>100_bases
GCGTGGTCGACGGCTGGATCATCCTCGACAAGCCTCTGGAACTCGGGTCGACTCAAGGGGTTGCGGCGGTAAAGCGCAAT
CTGCGGCAGGCCGGCTACGG

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNPEGLLWQVATIAIPMILAIVFHEVAHGWTARALGDPTAAEQRRLSLNPLRHVDPFGTIILPGLLKLTGAPVFGWAKPV
PVNFNRLRNPRWGMVAVAAAGPAMNFVLATLSAIALGLLVRATDLGGEPGLGVLFLSDNLRNFLIVNLFLGAFNLLPIPP
FDGSRIVMGVLPAPLARGYARIEPFGLLVVFGLLVILPYLAPNLHLVERLIGPPVDWLGQQLANLAVAVAGPEPI

Sequences:

>Translated_235_residues
MNPEGLLWQVATIAIPMILAIVFHEVAHGWTARALGDPTAAEQRRLSLNPLRHVDPFGTIILPGLLKLTGAPVFGWAKPV
PVNFNRLRNPRWGMVAVAAAGPAMNFVLATLSAIALGLLVRATDLGGEPGLGVLFLSDNLRNFLIVNLFLGAFNLLPIPP
FDGSRIVMGVLPAPLARGYARIEPFGLLVVFGLLVILPYLAPNLHLVERLIGPPVDWLGQQLANLAVAVAGPEPI
>Mature_235_residues
MNPEGLLWQVATIAIPMILAIVFHEVAHGWTARALGDPTAAEQRRLSLNPLRHVDPFGTIILPGLLKLTGAPVFGWAKPV
PVNFNRLRNPRWGMVAVAAAGPAMNFVLATLSAIALGLLVRATDLGGEPGLGVLFLSDNLRNFLIVNLFLGAFNLLPIPP
FDGSRIVMGVLPAPLARGYARIEPFGLLVVFGLLVILPYLAPNLHLVERLIGPPVDWLGQQLANLAVAVAGPEPI

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 25103; Mature: 25103

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPEGLLWQVATIAIPMILAIVFHEVAHGWTARALGDPTAAEQRRLSLNPLRHVDPFGTI
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHCCCCCCCCCCCCHHH
ILPGLLKLTGAPVFGWAKPVPVNFNRLRNPRWGMVAVAAAGPAMNFVLATLSAIALGLLV
HHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH
RATDLGGEPGLGVLFLSDNLRNFLIVNLFLGAFNLLPIPPFDGSRIVMGVLPAPLARGYA
HHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCHH
RIEPFGLLVVFGLLVILPYLAPNLHLVERLIGPPVDWLGQQLANLAVAVAGPEPI
HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCC
>Mature Secondary Structure
MNPEGLLWQVATIAIPMILAIVFHEVAHGWTARALGDPTAAEQRRLSLNPLRHVDPFGTI
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHCCCCCCCCCCCCHHH
ILPGLLKLTGAPVFGWAKPVPVNFNRLRNPRWGMVAVAAAGPAMNFVLATLSAIALGLLV
HHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH
RATDLGGEPGLGVLFLSDNLRNFLIVNLFLGAFNLLPIPPFDGSRIVMGVLPAPLARGYA
HHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCHH
RIEPFGLLVVFGLLVILPYLAPNLHLVERLIGPPVDWLGQQLANLAVAVAGPEPI
HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]