| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200470
Identifier: 87200470
GI number: 87200470
Start: 2648961
End: 2649866
Strand: Reverse
Name: 87200470
Synonym: Saro_2457
Alternate gene names: NA
Gene position: 2649866-2648961 (Counterclockwise)
Preceding gene: 87200471
Following gene: 87200468
Centisome position: 74.4
GC content: 63.13
Gene sequence:
>906_bases ATGGACCGCTTTGACCTCGGAATCGTCAAGGTTCATCGTATCGAGGAATGGCGCGGGACATTCTCGCCTCCAGCCGAACT TTTCGACGGCTTCTCACCAGACGGGTGGGAGCCTCATGCCGAGGAGTTCGCGCCCGAATACTACGATCCCGTCTCCGGAA AGCTCTTCGCCTTCCTCCAGAGCTGGGTGCTTGACACGGGCACGCAGCGCATCCTGTTCGATACGGGAGCCGGGAACGAC AAGGACCGTCCAAATCTGCCGATTTTCGGCAATCTCCAGACCGGGTTCCTCGATAATTTGGCTGCCGCCGGCTTCCAGCC CGAGGACATCGACGTCGTCGTATGCTCGCACATCCATGTCGATCACGTGGGATGGAACACGCGGTTGGTCGACGGTCGAT GGGAGCCTACTTTCCGTAACGCCCGCTATGTCCTGCCGCTTGCCGACCGCGCCTATTGGGACCCGCAGGACGCTTCGGCT GGGCCTGCGGGCATAGGCGCTGCGGTGAACGCCGGAATGTTCGACGACAGTGTTCGGCCGATCATCGAGGCCGGCCGCGC GGAATGGGCTGAGGATGGCTTCGAAGTGGCCGAAGGCTTGGTCCTGCGTTCGTGCCCCGGCCATACGCCCGGCAGCATGA TGCTCGAGGTTTCGGGCGGCGAGGACACCGCGATGTTCGTGGGCGATGTCGTGCACCATCCCGCACAGATCTATCGGCCC GAATGGAACAGCATTTTCTGCGAAGCGCCAGAGGACGCGCGCGAAACCCGCCGTCGCGTGCTCGACCTTGCAGCCTCGCG CGAGGCCTTGTTGATCCCGGCACATTTCGGCGGCAGCCATATGGCGCGCGTGCTGCGCGATGGAAGCGGCTTCCGTCCGG TTCTTGATCCGATGGGGAGCGGCTAG
Upstream 100 bases:
>100_bases TGCCGCCACGTTCGCCTATGTCCGCGTCGGCTCGGTCATGCCGCCGCGCACCTACGGGGTGACTGCCAGCGTGAATTTCT GACCCCTGGAAGGAGGCGAG
Downstream 100 bases:
>100_bases CGCGCCGCCAGCACCCCGGCCGCGTTCAGGGTGGCAATCGTCCTGCTGTCGAAACCCCAATTCTCGAGTGCCTGTGCACC ATTCTCGCCTGCCAGCGACG
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Beta-Lactamase; Beta-Lactamase-Like; Metallo-Beta-Lactamase Superfamily Protein; Twin-Arginine Translocation Pathway Signal; Beta-Lactamase-Like Protein; Metal Dependent Hydrolase; Metallo-Beta-Lactamase; Zn-Dependent Hydrolase; Hydrolase; Beta-Lactamase Family Protein; Metallo-Beta-Lactamase Superfamily; Metallo-Beta-Lactamase Domain-Containing Protein; Methyl Parathion Hydrolase; Metallo-Hydrolase Protein; Zn-Dependent Beta-Lactamase Domain Hydrolase; Beta-Lactamase/Hydrolase; Metal-Dependent Hydrolase; Metallo-Beta-Lactamase Protein; Zinc-Dependent Hydroxylase; Signal Peptide; Beta-Lactamase-Like Zn-Dependent Hydrolase Protein; GloB Protein; Aldehyde Dehydrogenase; LOW QUALITY PROTEIN Beta-Lactamase; Signal Peptide Protein; Beta-Lactamase Class B; Metall Dependent Hydrolase
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MDRFDLGIVKVHRIEEWRGTFSPPAELFDGFSPDGWEPHAEEFAPEYYDPVSGKLFAFLQSWVLDTGTQRILFDTGAGND KDRPNLPIFGNLQTGFLDNLAAAGFQPEDIDVVVCSHIHVDHVGWNTRLVDGRWEPTFRNARYVLPLADRAYWDPQDASA GPAGIGAAVNAGMFDDSVRPIIEAGRAEWAEDGFEVAEGLVLRSCPGHTPGSMMLEVSGGEDTAMFVGDVVHHPAQIYRP EWNSIFCEAPEDARETRRRVLDLAASREALLIPAHFGGSHMARVLRDGSGFRPVLDPMGSG
Sequences:
>Translated_301_residues MDRFDLGIVKVHRIEEWRGTFSPPAELFDGFSPDGWEPHAEEFAPEYYDPVSGKLFAFLQSWVLDTGTQRILFDTGAGND KDRPNLPIFGNLQTGFLDNLAAAGFQPEDIDVVVCSHIHVDHVGWNTRLVDGRWEPTFRNARYVLPLADRAYWDPQDASA GPAGIGAAVNAGMFDDSVRPIIEAGRAEWAEDGFEVAEGLVLRSCPGHTPGSMMLEVSGGEDTAMFVGDVVHHPAQIYRP EWNSIFCEAPEDARETRRRVLDLAASREALLIPAHFGGSHMARVLRDGSGFRPVLDPMGSG >Mature_301_residues MDRFDLGIVKVHRIEEWRGTFSPPAELFDGFSPDGWEPHAEEFAPEYYDPVSGKLFAFLQSWVLDTGTQRILFDTGAGND KDRPNLPIFGNLQTGFLDNLAAAGFQPEDIDVVVCSHIHVDHVGWNTRLVDGRWEPTFRNARYVLPLADRAYWDPQDASA GPAGIGAAVNAGMFDDSVRPIIEAGRAEWAEDGFEVAEGLVLRSCPGHTPGSMMLEVSGGEDTAMFVGDVVHHPAQIYRP EWNSIFCEAPEDARETRRRVLDLAASREALLIPAHFGGSHMARVLRDGSGFRPVLDPMGSG
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33161; Mature: 33161
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRFDLGIVKVHRIEEWRGTFSPPAELFDGFSPDGWEPHAEEFAPEYYDPVSGKLFAFLQ CCCCCCCEEEEEEEHHHCCCCCCHHHHHCCCCCCCCCCCHHHHCCHHCCCCCHHHHHHHH SWVLDTGTQRILFDTGAGNDKDRPNLPIFGNLQTGFLDNLAAAGFQPEDIDVVVCSHIHV HHHHCCCCCEEEEECCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCEEEEECEEEE DHVGWNTRLVDGRWEPTFRNARYVLPLADRAYWDPQDASAGPAGIGAAVNAGMFDDSVRP EECCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHH IIEAGRAEWAEDGFEVAEGLVLRSCPGHTPGSMMLEVSGGEDTAMFVGDVVHHPAQIYRP HHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHCCC EWNSIFCEAPEDARETRRRVLDLAASREALLIPAHFGGSHMARVLRDGSGFRPVLDPMGS CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCHHCCCCCC G C >Mature Secondary Structure MDRFDLGIVKVHRIEEWRGTFSPPAELFDGFSPDGWEPHAEEFAPEYYDPVSGKLFAFLQ CCCCCCCEEEEEEEHHHCCCCCCHHHHHCCCCCCCCCCCHHHHCCHHCCCCCHHHHHHHH SWVLDTGTQRILFDTGAGNDKDRPNLPIFGNLQTGFLDNLAAAGFQPEDIDVVVCSHIHV HHHHCCCCCEEEEECCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCEEEEECEEEE DHVGWNTRLVDGRWEPTFRNARYVLPLADRAYWDPQDASAGPAGIGAAVNAGMFDDSVRP EECCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHH IIEAGRAEWAEDGFEVAEGLVLRSCPGHTPGSMMLEVSGGEDTAMFVGDVVHHPAQIYRP HHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHCCC EWNSIFCEAPEDARETRRRVLDLAASREALLIPAHFGGSHMARVLRDGSGFRPVLDPMGS CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCHHCCCCCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA