| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is tfdFI [H]
Identifier: 87200468
GI number: 87200468
Start: 2646384
End: 2647562
Strand: Reverse
Name: tfdFI [H]
Synonym: Saro_2455
Alternate gene names: 87200468
Gene position: 2647562-2646384 (Counterclockwise)
Preceding gene: 87200470
Following gene: 87200467
Centisome position: 74.34
GC content: 64.89
Gene sequence:
>1179_bases GTGGGCAGCGTCAGAGCCAGCGAGATGACGTTTACCGAAACCGAGCGGGTCACCATGGGGCGTCCTGCCCGCGAGGCGAT CCGTGACCAGGCGGAGAAGATGGGGGCGCGCCGCGTGTTCATCCTCGCTTCGGACACCTTGCGGACCAAAACCGACGAGA TCGCAGCGATCGAGCGCGAACTTGGTGAACGGCACGCTGCGACCTTCAGCGGCATTGCGCCCCATGCACCCCGATCGGAC GTCCTGCGCGCCGCCGATGCCGCACGCGCGGCTGGCGCGGATCTGATCGTCTCGGTGGGTGGTGGCTCCGTCACCGACAG CGCGAAGATCGTGGCGCTGCTGCTCAAGCACGATGTGCGCAGCGTCGAGGCGTTCGAGCCGCTGCACGTCTATGTCGACG GCGATGGCAATGTGATCAACCCGCTCGCCGTCGGCCCGGATGTGCGTGTCATATGTGTGCCGACCACGCTTTCCGGCGGC GAGTTCAACGCGCTTTCAGGCGCTACCGACGAAGCGGTGCAGCACAAGCAGGGCTACGAGCATCGCGACATGGCGCCGGT CATGGTTGTGCTGGACCCGGCGCTGACGGTCTACACCCCCGAATGGCTCTGGCTTTCGACCGGGGTCCGATCTGTCGACC ATGCGGTGGAGACGCTCGCCTCCCACCTTTCCAATGATTTTGCGGATGGCCTTGCGGACAGCGCCCTGCGCCTTCTGGTC GAAGGGCTCAGTCGTGCCAAGGCGGACCCGACAGACATGGAGGCGCGCCTGAAGTGCCAGATCGGTGCATGGCAATCGAT GATCTCGATCATCGGCGGCGTGCCGATGGGCGCCAGCCATGCCATCGGCCACATCCTCGGCGGCACTTGCGACGTGCCGC ACGGCTATACGTCGTGCGTCATGTCCCCCTATGTGCTGGCCTGGAATGCCGAGCATGACGCGAGCCGGCAGGGGCGCATT CTGCAGTGCCTCGGCAATACCCACGCTTCGGCGTCCGAAGCGCTTGACGCCTTCATCCGCAGCCTGGGCATGCCTCGCAC CCTTTCCGAAGTGGGCGTCGGCGAGGACCGCTTCCAGCAGGTAGCAGAATATACCATGCTTGATATATGGGGGAGGACCA ATCCGCGGCCGGTCCGTTCGCCCGCTGATATCCTGGAGATACTGAGAAAGGCCGCATGA
Upstream 100 bases:
>100_bases ATCACAGGTCAAAAAATATACTAGCGGGTAATGCGTTGTCGTGGCACTCTCTGTGCAAGCGCCTCCCAGCAAGCGAAAGG CGCGTGGAAAGGAGAAAGTC
Downstream 100 bases:
>100_bases CCAAGTCCAGCACCGCCGCCAAGCCGCGTCAACGTGCCGCCGGCGCGCCTACCGGGCGCGAGATCAAGCCCGGTGTCGTC GCGTTCAAGCGGGCCCGCAT
Product: iron-containing alcohol dehydrogenase
Products: NA
Alternate protein names: Maleylacetate reductase I [H]
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MGSVRASEMTFTETERVTMGRPAREAIRDQAEKMGARRVFILASDTLRTKTDEIAAIERELGERHAATFSGIAPHAPRSD VLRAADAARAAGADLIVSVGGGSVTDSAKIVALLLKHDVRSVEAFEPLHVYVDGDGNVINPLAVGPDVRVICVPTTLSGG EFNALSGATDEAVQHKQGYEHRDMAPVMVVLDPALTVYTPEWLWLSTGVRSVDHAVETLASHLSNDFADGLADSALRLLV EGLSRAKADPTDMEARLKCQIGAWQSMISIIGGVPMGASHAIGHILGGTCDVPHGYTSCVMSPYVLAWNAEHDASRQGRI LQCLGNTHASASEALDAFIRSLGMPRTLSEVGVGEDRFQQVAEYTMLDIWGRTNPRPVRSPADILEILRKAA
Sequences:
>Translated_392_residues MGSVRASEMTFTETERVTMGRPAREAIRDQAEKMGARRVFILASDTLRTKTDEIAAIERELGERHAATFSGIAPHAPRSD VLRAADAARAAGADLIVSVGGGSVTDSAKIVALLLKHDVRSVEAFEPLHVYVDGDGNVINPLAVGPDVRVICVPTTLSGG EFNALSGATDEAVQHKQGYEHRDMAPVMVVLDPALTVYTPEWLWLSTGVRSVDHAVETLASHLSNDFADGLADSALRLLV EGLSRAKADPTDMEARLKCQIGAWQSMISIIGGVPMGASHAIGHILGGTCDVPHGYTSCVMSPYVLAWNAEHDASRQGRI LQCLGNTHASASEALDAFIRSLGMPRTLSEVGVGEDRFQQVAEYTMLDIWGRTNPRPVRSPADILEILRKAA >Mature_391_residues GSVRASEMTFTETERVTMGRPAREAIRDQAEKMGARRVFILASDTLRTKTDEIAAIERELGERHAATFSGIAPHAPRSDV LRAADAARAAGADLIVSVGGGSVTDSAKIVALLLKHDVRSVEAFEPLHVYVDGDGNVINPLAVGPDVRVICVPTTLSGGE FNALSGATDEAVQHKQGYEHRDMAPVMVVLDPALTVYTPEWLWLSTGVRSVDHAVETLASHLSNDFADGLADSALRLLVE GLSRAKADPTDMEARLKCQIGAWQSMISIIGGVPMGASHAIGHILGGTCDVPHGYTSCVMSPYVLAWNAEHDASRQGRIL QCLGNTHASASEALDAFIRSLGMPRTLSEVGVGEDRFQQVAEYTMLDIWGRTNPRPVRSPADILEILRKAA
Specific function: May Act On The Acetaldehyde Produced From The Degradation Of Ethanolamine. [C]
COG id: COG1454
COG function: function code C; Alcohol dehydrogenase, class IV
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI87082107, Length=373, Percent_Identity=25.201072386059, Blast_Score=106, Evalue=3e-24, Organism=Escherichia coli, GI48994951, Length=355, Percent_Identity=25.6338028169014, Blast_Score=105, Evalue=7e-24, Organism=Escherichia coli, GI1789163, Length=402, Percent_Identity=23.8805970149254, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787493, Length=375, Percent_Identity=25.6, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1789386, Length=355, Percent_Identity=27.0422535211268, Blast_Score=94, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6321181, Length=345, Percent_Identity=25.7971014492754, Blast_Score=103, Evalue=4e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001670 [H]
Pfam domain/function: PF00465 Fe-ADH [H]
EC number: =1.3.1.32 [H]
Molecular weight: Translated: 42006; Mature: 41875
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: PS00060 ADH_IRON_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSVRASEMTFTETERVTMGRPAREAIRDQAEKMGARRVFILASDTLRTKTDEIAAIERE CCCCCCCCEEECCCCHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCHHHHHHHHHH LGERHAATFSGIAPHAPRSDVLRAADAARAAGADLIVSVGGGSVTDSAKIVALLLKHDVR HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH SVEAFEPLHVYVDGDGNVINPLAVGPDVRVICVPTTLSGGEFNALSGATDEAVQHKQGYE HHHCCCCEEEEECCCCCEECCEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCC HRDMAPVMVVLDPALTVYTPEWLWLSTGVRSVDHAVETLASHLSNDFADGLADSALRLLV CCCCCCEEEEECCCEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EGLSRAKADPTDMEARLKCQIGAWQSMISIIGGVPMGASHAIGHILGGTCDVPHGYTSCV HHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHH MSPYVLAWNAEHDASRQGRILQCLGNTHASASEALDAFIRSLGMPRTLSEVGVGEDRFQQ CCCEEEEECCCCCCCCCCCHHEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHH VAEYTMLDIWGRTNPRPVRSPADILEILRKAA HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure GSVRASEMTFTETERVTMGRPAREAIRDQAEKMGARRVFILASDTLRTKTDEIAAIERE CCCCCCCEEECCCCHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCHHHHHHHHHH LGERHAATFSGIAPHAPRSDVLRAADAARAAGADLIVSVGGGSVTDSAKIVALLLKHDVR HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH SVEAFEPLHVYVDGDGNVINPLAVGPDVRVICVPTTLSGGEFNALSGATDEAVQHKQGYE HHHCCCCEEEEECCCCCEECCEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCC HRDMAPVMVVLDPALTVYTPEWLWLSTGVRSVDHAVETLASHLSNDFADGLADSALRLLV CCCCCCEEEEECCCEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EGLSRAKADPTDMEARLKCQIGAWQSMISIIGGVPMGASHAIGHILGGTCDVPHGYTSCV HHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHH MSPYVLAWNAEHDASRQGRILQCLGNTHASASEALDAFIRSLGMPRTLSEVGVGEDRFQQ CCCEEEEECCCCCCCCCCCHHEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHH VAEYTMLDIWGRTNPRPVRSPADILEILRKAA HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2185214 [H]