| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is csxA [H]
Identifier: 87200431
GI number: 87200431
Start: 2593789
End: 2596416
Strand: Direct
Name: csxA [H]
Synonym: Saro_2418
Alternate gene names: 87200431
Gene position: 2593789-2596416 (Clockwise)
Preceding gene: 87200430
Following gene: 87200432
Centisome position: 72.83
GC content: 68.34
Gene sequence:
>2628_bases GTGATCCGTCCGCTGCTGGGGGCTTTGCTGGCCACGGTTCCGGTCCTCGCCATGGCCGCGCCGCGCAGTGAAGTGCTGCT CGACAAGGGCTGGCAGGTGCGGCTCGATCCCGCAGACGCCGAAGCCGTGCGCGCGCACCCCAGGGCGGCGAAGTGGCTGC CTGCAACGGTCCCGGGCGTGGTTCAGGCCGACCTGGTTGCGCACAAGGTGGTGGCCGACCCGTTCGTCGGCCTCAACGAG GCGCAGGTTCAGTGGGCCGGCCGTAGCGACTGGATCTATCGACTGCCGCTGGAAGCCAACGCGGCCCTGCTGTCGCGCGG GCATGTCGAACTGGTGTTCGAGGGTCTGGACACCTTTGCCACGGTCACCGTCAACGGCAGCGAAGTGCTTTCGGCGGACA ATGCCCACCGCCGCTGGAGGGTGGACGTGCGCCACCTGCTGAAGCCCGGCGCGAACGAAGTGCTGATCCGCTTCCGCTCG CCGCTCAAGGTCCTGCAACCCAGGGTCCTGCCGCTGGAAAACCCGCTGCCGGGCGAATACGACAGCGTGTTCGGCGACGA GCCGGAAGGCCGCCAGACTTCGCCCTATATCCGCAAGCCCAAGTATCACTACGGCTGGGACTGGGGCCCGCGCATCCTCA ACATCGGCCCCAACGGCCCGGTCCGGATCGAGGCATGGGACGACGCGCGGATCGACGTGGTGCGCGTGCAGCAGGAGGCG ATCTCCGCCGCCGAAGCCCGGATTGCCGCCGAGGTCGAAATCGTGGCGGACAAGGATGGCGAAGCGGAAGTTGGCGCAAG CGCGATCGGTCCGGATGGCGCGACGGCGGCCAGCGGCACGCGCAAGGTGCATCTGGTGGCGGGACGCAACCGCGTTCTGG TTCCGCTTGCCATAGCATCGCCGCGCCTGTGGTATCCCGCCGGGTTCGGCGACCAGCCGCTCTATTCCGTGCGCACCAGC CTCAAGGTGAAGGACGAAGTGGTGGACGGCGCGGTCCGGTCGACCGGCCTGCGCACGGTCGAACTGCTGCGGGAGGCCGA CGCCAACGGACGCGGCTTCCAGTTGAAGATCAACGGGTTGCCCATCTTCATGAAGGGCGCGAACCTGATCCCCTTCGACA GCTTCCAGACGCGCGTGACCACGCAGCGCATGGCCGCGATCCTGGGCGACGCCAAGGCCGCCAACATGAACATGGTGCGC ATCTGGGGTGGCGGACACTATCTGCCCGACGCCTTCTACGACGCCGCAGACCGGCTGGGCCTGATGGTCTGGCAGGACTT CATGTTCGGCGGAGCGGTCACGCCCCATGATCGCGAGTTCCGCGAAAGCGTGCGGATCGAGGCGGAAGAGCAAGTCGACC GGGTGCAGGCCCATCCCTCCATCGTGATCTGGGCGGGCAACAACGAGGTGCTTTCCGGCTGGGAAACCTGGAGCGACCGC GTCGCCTTCAAGAAGCGCGTCGGCGCCGACGAGCAGGAGCGCGTGGGCGTGGGCATGGCGATCCTGTTCAACCAGGTCCT GCGCGACGCGGCCGAGCGGCGCGATGCCGACGTGCCGTACTGGCCGGGCTCGCCTTCGACCAACTACGAAGGCCGGCCCG ATGTCGACGGCGACGGCGACCGCCATTACTGGGACGTCTGGGGCGGCAAGAAGCCGGTCGAGGCCTATCTCGAGACCTGC CCGCGCTTCATGTCGGAATACGGACTCCAGGCCATGCCGGTGATGCCGACGATCCGCAGCTTTGCAGGACCCGGCGATCT GGAGATCACTTCGCCGGTCATGCGCGCCCACCAGAAGTTCATGCGGGGACAGGGGCAGGAGCGCCTGCTGCACTACATCG AACAGCGCTACCGGGCCCCGCGCGACTTTGCCGATTTCGTCTACCTGACGCAGGCCATGCAGGCCGACGGCATCGCGCTG GGCGCGCTGCACCATCGCGCCTGCAATCCGGTCACCTCCGGCTCGCTCTACTGGCAGCTCAACGATGTCTGGCCGGGAGC ATCGTGGTCGAGCGTGGACTACTACGGGCGCTGGAAGGCACTGCACTTCGCCGCGCGCCGCTTCTTCGCGCCGCTTGCCA TCGCGGCGGGCCGCAAGGCTGACGGTATGACCGAGGTGAGCCTCGTGTCGGATCGCACCGCGCCGCTGGACGCGCAGTGG CGGCTGCGGATCGTGAGCGTCGAGGGCAAGGAACGCGTGGTCGGCGGCGGCAATGCCACGGTCGCGCCGCTTTCGGCCTC GCGGGTCGGCACGTTCGACGATGCCGCGCTGTTCGGAAGCGACGACAAGCGCACCAGCTTTGCCGTGGCGGAGATGCTGG TGGACGGCAAGGTCGTATCCCGCGCGCTGGTTTCGGCGCTGCCGGAAAAGGCGATGGCCCTGCCCGACCCGGGGCTGACG ACCGCGTGGACCACCGCTCCGGACGGCAAGCCGCGCCTCACGGTAACGGCGGCGCGTCTTGCGCGCGGACTTTGGATCGG GTTCGGTGCGCTCGACGCGAGCGCCTCGGACAACTTCGTCGACCTGCTGCCGGGCGAGAGCGTGACGGTGGAGGTGACGT CCAAGGCTTCACCCGCCGCGCTGCGCAAGGCGCTGGAACTGCGCCATCTGGGCGAGAGCCGGCGATGA
Upstream 100 bases:
>100_bases TCGATGCCAAGCAGGGCGACGGCGCGCTGTGCATGCAGTTCACCTCTCCTCTGTACGATCCGTTCTATGCCATCGAAAAG GTGGTGCTGGAGGACTCGCA
Downstream 100 bases:
>100_bases GCGCGCTACTAATCCTGCTGGCCGCCGGCGCGGCACAGCCCGACGCGGACATCGCGGCCAGGATCGCGGCGATGAGCGAT GCCGAAAAGGCCGCGCAGCT
Product: beta-mannosidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 875; Mature: 875
Protein sequence:
>875_residues MIRPLLGALLATVPVLAMAAPRSEVLLDKGWQVRLDPADAEAVRAHPRAAKWLPATVPGVVQADLVAHKVVADPFVGLNE AQVQWAGRSDWIYRLPLEANAALLSRGHVELVFEGLDTFATVTVNGSEVLSADNAHRRWRVDVRHLLKPGANEVLIRFRS PLKVLQPRVLPLENPLPGEYDSVFGDEPEGRQTSPYIRKPKYHYGWDWGPRILNIGPNGPVRIEAWDDARIDVVRVQQEA ISAAEARIAAEVEIVADKDGEAEVGASAIGPDGATAASGTRKVHLVAGRNRVLVPLAIASPRLWYPAGFGDQPLYSVRTS LKVKDEVVDGAVRSTGLRTVELLREADANGRGFQLKINGLPIFMKGANLIPFDSFQTRVTTQRMAAILGDAKAANMNMVR IWGGGHYLPDAFYDAADRLGLMVWQDFMFGGAVTPHDREFRESVRIEAEEQVDRVQAHPSIVIWAGNNEVLSGWETWSDR VAFKKRVGADEQERVGVGMAILFNQVLRDAAERRDADVPYWPGSPSTNYEGRPDVDGDGDRHYWDVWGGKKPVEAYLETC PRFMSEYGLQAMPVMPTIRSFAGPGDLEITSPVMRAHQKFMRGQGQERLLHYIEQRYRAPRDFADFVYLTQAMQADGIAL GALHHRACNPVTSGSLYWQLNDVWPGASWSSVDYYGRWKALHFAARRFFAPLAIAAGRKADGMTEVSLVSDRTAPLDAQW RLRIVSVEGKERVVGGGNATVAPLSASRVGTFDDAALFGSDDKRTSFAVAEMLVDGKVVSRALVSALPEKAMALPDPGLT TAWTTAPDGKPRLTVTAARLARGLWIGFGALDASASDNFVDLLPGESVTVEVTSKASPAALRKALELRHLGESRR
Sequences:
>Translated_875_residues MIRPLLGALLATVPVLAMAAPRSEVLLDKGWQVRLDPADAEAVRAHPRAAKWLPATVPGVVQADLVAHKVVADPFVGLNE AQVQWAGRSDWIYRLPLEANAALLSRGHVELVFEGLDTFATVTVNGSEVLSADNAHRRWRVDVRHLLKPGANEVLIRFRS PLKVLQPRVLPLENPLPGEYDSVFGDEPEGRQTSPYIRKPKYHYGWDWGPRILNIGPNGPVRIEAWDDARIDVVRVQQEA ISAAEARIAAEVEIVADKDGEAEVGASAIGPDGATAASGTRKVHLVAGRNRVLVPLAIASPRLWYPAGFGDQPLYSVRTS LKVKDEVVDGAVRSTGLRTVELLREADANGRGFQLKINGLPIFMKGANLIPFDSFQTRVTTQRMAAILGDAKAANMNMVR IWGGGHYLPDAFYDAADRLGLMVWQDFMFGGAVTPHDREFRESVRIEAEEQVDRVQAHPSIVIWAGNNEVLSGWETWSDR VAFKKRVGADEQERVGVGMAILFNQVLRDAAERRDADVPYWPGSPSTNYEGRPDVDGDGDRHYWDVWGGKKPVEAYLETC PRFMSEYGLQAMPVMPTIRSFAGPGDLEITSPVMRAHQKFMRGQGQERLLHYIEQRYRAPRDFADFVYLTQAMQADGIAL GALHHRACNPVTSGSLYWQLNDVWPGASWSSVDYYGRWKALHFAARRFFAPLAIAAGRKADGMTEVSLVSDRTAPLDAQW RLRIVSVEGKERVVGGGNATVAPLSASRVGTFDDAALFGSDDKRTSFAVAEMLVDGKVVSRALVSALPEKAMALPDPGLT TAWTTAPDGKPRLTVTAARLARGLWIGFGALDASASDNFVDLLPGESVTVEVTSKASPAALRKALELRHLGESRR >Mature_875_residues MIRPLLGALLATVPVLAMAAPRSEVLLDKGWQVRLDPADAEAVRAHPRAAKWLPATVPGVVQADLVAHKVVADPFVGLNE AQVQWAGRSDWIYRLPLEANAALLSRGHVELVFEGLDTFATVTVNGSEVLSADNAHRRWRVDVRHLLKPGANEVLIRFRS PLKVLQPRVLPLENPLPGEYDSVFGDEPEGRQTSPYIRKPKYHYGWDWGPRILNIGPNGPVRIEAWDDARIDVVRVQQEA ISAAEARIAAEVEIVADKDGEAEVGASAIGPDGATAASGTRKVHLVAGRNRVLVPLAIASPRLWYPAGFGDQPLYSVRTS LKVKDEVVDGAVRSTGLRTVELLREADANGRGFQLKINGLPIFMKGANLIPFDSFQTRVTTQRMAAILGDAKAANMNMVR IWGGGHYLPDAFYDAADRLGLMVWQDFMFGGAVTPHDREFRESVRIEAEEQVDRVQAHPSIVIWAGNNEVLSGWETWSDR VAFKKRVGADEQERVGVGMAILFNQVLRDAAERRDADVPYWPGSPSTNYEGRPDVDGDGDRHYWDVWGGKKPVEAYLETC PRFMSEYGLQAMPVMPTIRSFAGPGDLEITSPVMRAHQKFMRGQGQERLLHYIEQRYRAPRDFADFVYLTQAMQADGIAL GALHHRACNPVTSGSLYWQLNDVWPGASWSSVDYYGRWKALHFAARRFFAPLAIAAGRKADGMTEVSLVSDRTAPLDAQW RLRIVSVEGKERVVGGGNATVAPLSASRVGTFDDAALFGSDDKRTSFAVAEMLVDGKVVSRALVSALPEKAMALPDPGLT TAWTTAPDGKPRLTVTAARLARGLWIGFGALDASASDNFVDLLPGESVTVEVTSKASPAALRKALELRHLGESRR
Specific function: Hydrolyzes chitosan and chitooligosaccharides with retention of anomeric configuration. Has no beta-mannosidase activity [H]
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Secreted, extracellular space [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 2 family [H]
Homologues:
Organism=Homo sapiens, GI84798622, Length=720, Percent_Identity=29.3055555555556, Blast_Score=314, Evalue=3e-85, Organism=Caenorhabditis elegans, GI17550784, Length=726, Percent_Identity=27.961432506887, Blast_Score=272, Evalue=5e-73, Organism=Drosophila melanogaster, GI24643838, Length=670, Percent_Identity=26.865671641791, Blast_Score=237, Evalue=3e-62, Organism=Drosophila melanogaster, GI24643840, Length=552, Percent_Identity=28.6231884057971, Blast_Score=213, Evalue=6e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008979 - InterPro: IPR013812 - InterPro: IPR006104 - InterPro: IPR006102 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00703 Glyco_hydro_2; PF02837 Glyco_hydro_2_N [H]
EC number: =3.2.1.165 [H]
Molecular weight: Translated: 95973; Mature: 95973
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRPLLGALLATVPVLAMAAPRSEVLLDKGWQVRLDPADAEAVRAHPRAAKWLPATVPGV CCHHHHHHHHHHHHHHHHCCCCCHHEECCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCH VQADLVAHKVVADPFVGLNEAQVQWAGRSDWIYRLPLEANAALLSRGHVELVFEGLDTFA HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEECCCCCCHHHHHCCCEEEEEECCCCEE TVTVNGSEVLSADNAHRRWRVDVRHLLKPGANEVLIRFRSPLKVLQPRVLPLENPLPGEY EEEECCHHHCCCCCCCCEEHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCCCCCH DSVFGDEPEGRQTSPYIRKPKYHYGWDWGPRILNIGPNGPVRIEAWDDARIDVVRVQQEA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEHHHH ISAAEARIAAEVEIVADKDGEAEVGASAIGPDGATAASGTRKVHLVAGRNRVLVPLAIAS HHHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECC PRLWYPAGFGDQPLYSVRTSLKVKDEVVDGAVRSTGLRTVELLREADANGRGFQLKINGL CCEEECCCCCCCCHHHHHHHCEEHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEECCE PIFMKGANLIPFDSFQTRVTTQRMAAILGDAKAANMNMVRIWGGGHYLPDAFYDAADRLG EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH LMVWQDFMFGGAVTPHDREFRESVRIEAEEQVDRVQAHPSIVIWAGNNEVLSGWETWSDR HHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCEECCHHHHHHH VAFKKRVGADEQERVGVGMAILFNQVLRDAAERRDADVPYWPGSPSTNYEGRPDVDGDGD HHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC RHYWDVWGGKKPVEAYLETCPRFMSEYGLQAMPVMPTIRSFAGPGDLEITSPVMRAHQKF CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEECHHHHHHHHHH MRGQGQERLLHYIEQRYRAPRDFADFVYLTQAMQADGIALGALHHRACNPVTSGSLYWQL HHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCCCCEEEEEE NDVWPGASWSSVDYYGRWKALHFAARRFFAPLAIAAGRKADGMTEVSLVSDRTAPLDAQW ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCE RLRIVSVEGKERVVGGGNATVAPLSASRVGTFDDAALFGSDDKRTSFAVAEMLVDGKVVS EEEEEEECCCCEEECCCCCEEEECCCCCCCCCCCHHEECCCCCHHHHHHHHHHHHHHHHH RALVSALPEKAMALPDPGLTTAWTTAPDGKPRLTVTAARLARGLWIGFGALDASASDNFV HHHHHHCCHHHHCCCCCCCCEEEECCCCCCCEEEEEHHHHHHHHEEEEECCCCCCCCCEE DLLPGESVTVEVTSKASPAALRKALELRHLGESRR EECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIRPLLGALLATVPVLAMAAPRSEVLLDKGWQVRLDPADAEAVRAHPRAAKWLPATVPGV CCHHHHHHHHHHHHHHHHCCCCCHHEECCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCH VQADLVAHKVVADPFVGLNEAQVQWAGRSDWIYRLPLEANAALLSRGHVELVFEGLDTFA HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEECCCCCCHHHHHCCCEEEEEECCCCEE TVTVNGSEVLSADNAHRRWRVDVRHLLKPGANEVLIRFRSPLKVLQPRVLPLENPLPGEY EEEECCHHHCCCCCCCCEEHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCCCCCH DSVFGDEPEGRQTSPYIRKPKYHYGWDWGPRILNIGPNGPVRIEAWDDARIDVVRVQQEA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEHHHH ISAAEARIAAEVEIVADKDGEAEVGASAIGPDGATAASGTRKVHLVAGRNRVLVPLAIAS HHHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECC PRLWYPAGFGDQPLYSVRTSLKVKDEVVDGAVRSTGLRTVELLREADANGRGFQLKINGL CCEEECCCCCCCCHHHHHHHCEEHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEECCE PIFMKGANLIPFDSFQTRVTTQRMAAILGDAKAANMNMVRIWGGGHYLPDAFYDAADRLG EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH LMVWQDFMFGGAVTPHDREFRESVRIEAEEQVDRVQAHPSIVIWAGNNEVLSGWETWSDR HHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCEECCHHHHHHH VAFKKRVGADEQERVGVGMAILFNQVLRDAAERRDADVPYWPGSPSTNYEGRPDVDGDGD HHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC RHYWDVWGGKKPVEAYLETCPRFMSEYGLQAMPVMPTIRSFAGPGDLEITSPVMRAHQKF CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEECHHHHHHHHHH MRGQGQERLLHYIEQRYRAPRDFADFVYLTQAMQADGIALGALHHRACNPVTSGSLYWQL HHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCCCCEEEEEE NDVWPGASWSSVDYYGRWKALHFAARRFFAPLAIAAGRKADGMTEVSLVSDRTAPLDAQW ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCE RLRIVSVEGKERVVGGGNATVAPLSASRVGTFDDAALFGSDDKRTSFAVAEMLVDGKVVS EEEEEEECCCCEEECCCCCEEEECCCCCCCCCCCHHEECCCCCHHHHHHHHHHHHHHHHH RALVSALPEKAMALPDPGLTTAWTTAPDGKPRLTVTAARLARGLWIGFGALDASASDNFV HHHHHHCCHHHHCCCCCCCCEEEECCCCCCCEEEEEHHHHHHHHEEEEECCCCCCCCCEE DLLPGESVTVEVTSKASPAALRKALELRHLGESRR EECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11572948; 12692562 [H]