Click here to switch to the map view.

The map label for this gene is atpC

Identifier: 87200416

GI number: 87200416

Start: 2571460

End: 2571717

Strand: Direct

Name: atpC

Synonym: Saro_2403

Alternate gene names: 87200416

Gene position: 2571460-2571717 (Clockwise)

Preceding gene: 87200415

Following gene: 87200417

Centisome position: 72.2

GC content: 64.34

Gene sequence:

>258_bases
ATGTCTCTCCACTTCGAACTCGTGACCCCGGCCCGCCTCGTCCGCTCGGAAGAGGTCCACATGGTCGTCGTTCCCGGCAC
CGATGGCGAATTCGGCGTGCTGGAAGGCCACGCGCCGTTCATGTCGACGGTCAAGGACGGAGCGATCAAGGTTTACAGGT
CGGCAGGGGCTGCCCCTGAAGAGATCCAGGTCCAGGGCGGCTTCGCGGAAGTCAGCGCCAAGGGCCTGACGGTTCTCGCC
GAACACGTCGAAGGCTGA

Upstream 100 bases:

>100_bases
GTTGGGCACCCTCCCCTGGAAATGGAAAGCCCTCCCCCAGCCCCTCCCACCCGTGGGAGGGGAGATTTCAGACCTCCGGC
AAGCGGAGGGGAGTTTGATC

Downstream 100 bases:

>100_bases
TCGGCTTCAACCGACACGGAAAAGGGCCGGCCCGCAAGGGTCGGCCCTTTTCGTTTGCGCCAGCCCCCAGATGGCGTCTC
GCCTTCACCCGGCACGAACG

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 85; Mature: 84

Protein sequence:

>85_residues
MSLHFELVTPARLVRSEEVHMVVVPGTDGEFGVLEGHAPFMSTVKDGAIKVYRSAGAAPEEIQVQGGFAEVSAKGLTVLA
EHVEG

Sequences:

>Translated_85_residues
MSLHFELVTPARLVRSEEVHMVVVPGTDGEFGVLEGHAPFMSTVKDGAIKVYRSAGAAPEEIQVQGGFAEVSAKGLTVLA
EHVEG
>Mature_84_residues
SLHFELVTPARLVRSEEVHMVVVPGTDGEFGVLEGHAPFMSTVKDGAIKVYRSAGAAPEEIQVQGGFAEVSAKGLTVLAE
HVEG

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_NOVAD (Q2G5N4)

Other databases:

- EMBL:   CP000248
- RefSeq:   YP_497673.1
- ProteinModelPortal:   Q2G5N4
- SMR:   Q2G5N4
- STRING:   Q2G5N4
- GeneID:   3916722
- GenomeReviews:   CP000248_GR
- KEGG:   nar:Saro_2403
- NMPDR:   fig|48935.1.peg.428
- eggNOG:   COG0355
- HOGENOM:   HBG663981
- OMA:   LEGHAPF
- ProtClustDB:   PRK13449
- BioCyc:   NARO279238:SARO_2403-MONOMER
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020546
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944

Pfam domain/function: PF02823 ATP-synt_DE_N; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 8975; Mature: 8844

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLHFELVTPARLVRSEEVHMVVVPGTDGEFGVLEGHAPFMSTVKDGAIKVYRSAGAAPE
CCEEEEEECHHHHHCCCCEEEEEEECCCCCEEEEECCCCCHHHHCCCCEEEEECCCCCCC
EIQVQGGFAEVSAKGLTVLAEHVEG
EEEEECCEEEECCCCCEEEEEECCC
>Mature Secondary Structure 
SLHFELVTPARLVRSEEVHMVVVPGTDGEFGVLEGHAPFMSTVKDGAIKVYRSAGAAPE
CEEEEEECHHHHHCCCCEEEEEEECCCCCEEEEECCCCCHHHHCCCCEEEEECCCCCCC
EIQVQGGFAEVSAKGLTVLAEHVEG
EEEEECCEEEECCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA