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The map label for this gene is atpD [H]

Identifier: 87200415

GI number: 87200415

Start: 2569866

End: 2571311

Strand: Direct

Name: atpD [H]

Synonym: Saro_2402

Alternate gene names: 87200415

Gene position: 2569866-2571311 (Clockwise)

Preceding gene: 87200414

Following gene: 87200416

Centisome position: 72.16

GC content: 65.77

Gene sequence:

>1446_bases
ATGGCCACCGTGCTCTCCTCTACCGGCAAGATCAGCCAGGTCATCGGCGCCGTCGTCGACGTGACCTTCGACGGCGAACT
GCCCGCGATTCTCTCGGCGCTCGAAACCGACAACAACGGCAACCGCCTCGTTCTCGAAGTCGCACAGCACCTCGGCGAGA
ACACCGTTCGCACCATCGCGATGGACTCGACCGACGGCCTGACCCGCGGCCAGCCGGTGACCAACACCGGCGCGCAGATC
TCGGTGCCGGTCGGCCCCAAGACCCTCGGCCGCATCATGAACGTCATCGGCGAGCCGATCGACGAGCGTGGCCCGGTCGG
CGCGGAACAGACCGCCCCGATTCACGCCAAGGCTCCGGAATTCATCGAGCAGTCGACCGAAGCCGCGATCCTCGTGACCG
GCATCAAGGTCATCGACCTTCTCGCTCCCTATGCGCGCGGCGGCAAGATCGGCCTGTTCGGCGGCGCCGGCGTGGGCAAG
ACCGTGCTCATCCAGGAGCTGATCAACAACATCGCCAAGGGCCACGGCGGCGTGTCGGTCTTCGCGGGCGTCGGCGAACG
CACCCGTGAAGGCAACGACCTCTATCACGAGTTCCTCGACGCCGGCGTTATCGCCAAGGACGCCGACGGCAACCCGACCC
CGGACGGCTCGAAGGTCGCCCTCGTGTTCGGCCAGATGAACGAACCGCCGGGCGCCCGTGCTCGCGTCGCGCTCTCGGGC
CTGACCATGGCAGAATACTTCCGCGACCAGGAAGGCCAGGACGTTCTGTTCTTCGTCGACAACATCTTCCGCTTCACCCA
GGCGGGTTCGGAAGTGTCGGCTCTGCTCGGCCGTATTCCTTCGGCGGTGGGCTACCAGCCGACGCTGGCCACCGACATGG
GCCAGCTGCAGGAACGCATCACCTCGACCACCAAGGGCTCGATCACCTCGGTGCAGGCGATCTACGTCCCCGCGGACGAC
CTTACCGACCCGGCGCCGGCCACCTCGTTCGCCCACTTGGACGCAACGACCACGCTGAACCGCGCAATCTCGGAACTCGG
CATCTACCCGGCGGTCGACCCGCTCGACTCGACCTCGCGCGTTCTCACCCCCGCCGTCGTCGGACAGGAGCACTACGAGA
CCGCCCGCCGCGTTCAGGAAACGCTGCAGAAGTACAAGTCGCTGCAGGACATCATCGCGATCCTCGGCATGGACGAGCTT
TCTGAAGAAGATAAGCTCACCGTCGCCCGCGCCCGCAAGATCCAGCGCTTCCTGTCGCAGCCGTTCCACGTCGCCGAAGT
GTTCACCGGCATCCCCGGCAAGTTCGTCCAGGTCGAAGACACCGTCCGCTCGTTCAAGGCGGTTGTCGACGGCGAGTACG
ACCACCTTCCGGAAGCCGCGTTCTACATGGTCGGCGGCATCGACGAAGCGGTCGAGAAGGCCAAGAAGCTGGCTGCCGAA
GCCTGA

Upstream 100 bases:

>100_bases
CTCATCGAAATCATTGCTGGTGCTGAAGCACTGTAGCAACATCAAGAACTTGGGGCGCTGAAGCGCTCTGACGACAGAGA
TAGAAGGCAAGGAAACAACC

Downstream 100 bases:

>100_bases
TGCTTCTCTCTCCCCTCCCGCTTGCGGGAGGGGTCAGGGGGAGGGCCTGTTGGGCACCCTCCCCTGGAAATGGAAAGCCC
TCCCCCAGCCCCTCCCACCC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 481; Mature: 480

Protein sequence:

>481_residues
MATVLSSTGKISQVIGAVVDVTFDGELPAILSALETDNNGNRLVLEVAQHLGENTVRTIAMDSTDGLTRGQPVTNTGAQI
SVPVGPKTLGRIMNVIGEPIDERGPVGAEQTAPIHAKAPEFIEQSTEAAILVTGIKVIDLLAPYARGGKIGLFGGAGVGK
TVLIQELINNIAKGHGGVSVFAGVGERTREGNDLYHEFLDAGVIAKDADGNPTPDGSKVALVFGQMNEPPGARARVALSG
LTMAEYFRDQEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQLQERITSTTKGSITSVQAIYVPADD
LTDPAPATSFAHLDATTTLNRAISELGIYPAVDPLDSTSRVLTPAVVGQEHYETARRVQETLQKYKSLQDIIAILGMDEL
SEEDKLTVARARKIQRFLSQPFHVAEVFTGIPGKFVQVEDTVRSFKAVVDGEYDHLPEAAFYMVGGIDEAVEKAKKLAAE
A

Sequences:

>Translated_481_residues
MATVLSSTGKISQVIGAVVDVTFDGELPAILSALETDNNGNRLVLEVAQHLGENTVRTIAMDSTDGLTRGQPVTNTGAQI
SVPVGPKTLGRIMNVIGEPIDERGPVGAEQTAPIHAKAPEFIEQSTEAAILVTGIKVIDLLAPYARGGKIGLFGGAGVGK
TVLIQELINNIAKGHGGVSVFAGVGERTREGNDLYHEFLDAGVIAKDADGNPTPDGSKVALVFGQMNEPPGARARVALSG
LTMAEYFRDQEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQLQERITSTTKGSITSVQAIYVPADD
LTDPAPATSFAHLDATTTLNRAISELGIYPAVDPLDSTSRVLTPAVVGQEHYETARRVQETLQKYKSLQDIIAILGMDEL
SEEDKLTVARARKIQRFLSQPFHVAEVFTGIPGKFVQVEDTVRSFKAVVDGEYDHLPEAAFYMVGGIDEAVEKAKKLAAE
A
>Mature_480_residues
ATVLSSTGKISQVIGAVVDVTFDGELPAILSALETDNNGNRLVLEVAQHLGENTVRTIAMDSTDGLTRGQPVTNTGAQIS
VPVGPKTLGRIMNVIGEPIDERGPVGAEQTAPIHAKAPEFIEQSTEAAILVTGIKVIDLLAPYARGGKIGLFGGAGVGKT
VLIQELINNIAKGHGGVSVFAGVGERTREGNDLYHEFLDAGVIAKDADGNPTPDGSKVALVFGQMNEPPGARARVALSGL
TMAEYFRDQEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQLQERITSTTKGSITSVQAIYVPADDL
TDPAPATSFAHLDATTTLNRAISELGIYPAVDPLDSTSRVLTPAVVGQEHYETARRVQETLQKYKSLQDIIAILGMDELS
EEDKLTVARARKIQRFLSQPFHVAEVFTGIPGKFVQVEDTVRSFKAVVDGEYDHLPEAAFYMVGGIDEAVEKAKKLAAEA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=476, Percent_Identity=77.5210084033613, Blast_Score=742, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=306, Percent_Identity=28.4313725490196, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI19913428, Length=372, Percent_Identity=26.6129032258064, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI19913426, Length=379, Percent_Identity=25.8575197889182, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI50345984, Length=393, Percent_Identity=25.6997455470738, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI4757810, Length=393, Percent_Identity=25.6997455470738, Blast_Score=96, Evalue=1e-19,
Organism=Escherichia coli, GI1790170, Length=472, Percent_Identity=69.2796610169492, Blast_Score=644, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=410, Percent_Identity=28.5365853658537, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1790172, Length=338, Percent_Identity=27.5147928994083, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI25144756, Length=479, Percent_Identity=74.7390396659708, Blast_Score=732, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=327, Percent_Identity=28.1345565749235, Blast_Score=121, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI17510931, Length=357, Percent_Identity=26.3305322128852, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17570191, Length=357, Percent_Identity=26.0504201680672, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=337, Percent_Identity=26.7062314540059, Blast_Score=97, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71988063, Length=337, Percent_Identity=26.7062314540059, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71988074, Length=324, Percent_Identity=25.9259259259259, Blast_Score=77, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=465, Percent_Identity=77.6344086021505, Blast_Score=724, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=368, Percent_Identity=25.8152173913043, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6319370, Length=402, Percent_Identity=25.3731343283582, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6320016, Length=322, Percent_Identity=24.8447204968944, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24638766, Length=475, Percent_Identity=77.4736842105263, Blast_Score=741, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=472, Percent_Identity=70.3389830508475, Blast_Score=664, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=71.4285714285714, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI20129479, Length=306, Percent_Identity=27.4509803921569, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24583992, Length=306, Percent_Identity=28.1045751633987, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24583988, Length=327, Percent_Identity=27.217125382263, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583986, Length=327, Percent_Identity=27.217125382263, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583984, Length=327, Percent_Identity=27.217125382263, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI281361666, Length=368, Percent_Identity=25.5434782608696, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24646341, Length=368, Percent_Identity=25.5434782608696, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI17136796, Length=368, Percent_Identity=25.5434782608696, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24658560, Length=330, Percent_Identity=25.7575757575758, Blast_Score=89, Evalue=8e-18,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51139; Mature: 51008

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVLSSTGKISQVIGAVVDVTFDGELPAILSALETDNNGNRLVLEVAQHLGENTVRTIA
CCCCCCCCCHHHHHHHHHHEEEECCCHHHHHHHHHCCCCCCEEHHHHHHHCCCCCEEEEE
MDSTDGLTRGQPVTNTGAQISVPVGPKTLGRIMNVIGEPIDERGPVGAEQTAPIHAKAPE
ECCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
FIEQSTEAAILVTGIKVIDLLAPYARGGKIGLFGGAGVGKTVLIQELINNIAKGHGGVSV
HHHHCCCCEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
FAGVGERTREGNDLYHEFLDAGVIAKDADGNPTPDGSKVALVFGQMNEPPGARARVALSG
EECCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEHH
LTMAEYFRDQEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQLQERI
HHHHHHHCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHH
TSTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTTLNRAISELGIYPAVDPLDSTSR
HHCCCCCCEEEEEEEECCCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCCHH
VLTPAVVGQEHYETARRVQETLQKYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQ
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCC
PFHVAEVFTGIPGKFVQVEDTVRSFKAVVDGEYDHLPEAAFYMVGGIDEAVEKAKKLAAE
CHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHCCHHHHHHHHHHHHCC
A
C
>Mature Secondary Structure 
ATVLSSTGKISQVIGAVVDVTFDGELPAILSALETDNNGNRLVLEVAQHLGENTVRTIA
CCCCCCCCHHHHHHHHHHEEEECCCHHHHHHHHHCCCCCCEEHHHHHHHCCCCCEEEEE
MDSTDGLTRGQPVTNTGAQISVPVGPKTLGRIMNVIGEPIDERGPVGAEQTAPIHAKAPE
ECCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
FIEQSTEAAILVTGIKVIDLLAPYARGGKIGLFGGAGVGKTVLIQELINNIAKGHGGVSV
HHHHCCCCEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
FAGVGERTREGNDLYHEFLDAGVIAKDADGNPTPDGSKVALVFGQMNEPPGARARVALSG
EECCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEHH
LTMAEYFRDQEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQLQERI
HHHHHHHCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHH
TSTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTTLNRAISELGIYPAVDPLDSTSR
HHCCCCCCEEEEEEEECCCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCCHH
VLTPAVVGQEHYETARRVQETLQKYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQ
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCC
PFHVAEVFTGIPGKFVQVEDTVRSFKAVVDGEYDHLPEAAFYMVGGIDEAVEKAKKLAAE
CHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCHHCCCCHHHHHHCCHHHHHHHHHHHHCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA