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The map label for this gene is yhcM [H]

Identifier: 87200338

GI number: 87200338

Start: 2467652

End: 2468785

Strand: Direct

Name: yhcM [H]

Synonym: Saro_2324

Alternate gene names: 87200338

Gene position: 2467652-2468785 (Clockwise)

Preceding gene: 87200337

Following gene: 87200339

Centisome position: 69.29

GC content: 66.75

Gene sequence:

>1134_bases
ATGACCTCGGTCCTCCAGCGCTATCACGAACTCGTCGCCGCCGGCGAACTGCGGCCGGACGCGGAGCAGGCGGCCGCCGC
CGCAAGGCTCGATACGCTCCAGCGCGAACTTGAAGCGCCTGCGCCGTCGGGCGGCTTCCTCAGCCGGCTGTTCGGCAGCA
AGCCCCCGCCGGCCCCGCGCGGCCTCTACATGTGGGGCGGCGTCGGGCGCGGCAAGTCCATGCTCATGGACCTGTTCCAC
GACAACCTGTCCGTTCCCGCCAAGCGGCGCGCGCACTTCCACGAGTTCATGCTCGACGTCCACGCGCGCCTGCGCGAAGA
GCGCAAGAAAGAAAGCGGAGACCCGATCCTCCCGGTCGCCGCCGCAATCGCGGCCGAGACGCGGGTGCTGTGCTTCGACG
AGATGGTCGTCAACAACAGCGCCGACGCGATGATCATGAGCCGCCTGTTCACCGCGCTGATGATCGAGGGCGGGGTCACC
GTTGTCACCACATCGAATCGCGCACCGCAGGACCTCTACAAGAACGGCCTCAACCGCGAACACTTCCTGCCGTTCATCGC
ACTGATCGAAAGCCGATTGGACGTGCTGACGCTCAACGGTCCTGTCGACTACCGGCTCGAGCGCATGAAGGGCGTAGGCA
CCTGGCACGTTCCCGTCGGCCCCGCGTCGACCGAAGCGGTGCGCGAGGCGTTTTTCCGGCTGACCGACTATCCGCCCGAG
GACAGCGACCACGTCCCGAGCTGCGACCTCGACGTCGGCGGCGGGCGCCTGCTCCACGTGCCCAAAAGCCTGAAGGGCGT
GGGCGTGTTCAGCTTCAAGCGGCTGTGCAGCGAGGCGCGCGGAGCGGCGGACTACCTGGCGATCGCGCGGCATTTCCACA
CCGTGATCGTCGTGGCGATCCCGCGCCTGGGCCCGGAATTGCGCAACGAAACCGCGCGTTTCATCACGCTGATCGACGCG
CTCTACGAACACAAGGTCAAGCTGATCGCCACCGCCGATGCGGAGCCTGCCGCGCTTTACGACTGGCAGGGCAAGGGCGA
CGAGGAAGGCCGGTTCATGTTCGACCGGACCGTAAGCCGCCTGATGGAAATGCAAAGCCAGGACTATCTGGCGCTCGGCC
ACGGCGAAGACTGA

Upstream 100 bases:

>100_bases
TGCGCGAGACTGGCCGCCTCGTCTTCCTGCGCGGCCTCGTCGTCCAGGGCGACGACACGATCGCCGCCTTCAACGGCACG
ATCCGCAAGCCGACGAAACG

Downstream 100 bases:

>100_bases
AAAGCCAAACTACGAGGCAATACGCTGCCCCGCTAAACCGCACCCTCATGTCGCGGCGTGTTAACCACGAATCACTTGAG
GAATATCAGACAAGCTATGC

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTSVLQRYHELVAAGELRPDAEQAAAAARLDTLQRELEAPAPSGGFLSRLFGSKPPPAPRGLYMWGGVGRGKSMLMDLFH
DNLSVPAKRRAHFHEFMLDVHARLREERKKESGDPILPVAAAIAAETRVLCFDEMVVNNSADAMIMSRLFTALMIEGGVT
VVTTSNRAPQDLYKNGLNREHFLPFIALIESRLDVLTLNGPVDYRLERMKGVGTWHVPVGPASTEAVREAFFRLTDYPPE
DSDHVPSCDLDVGGGRLLHVPKSLKGVGVFSFKRLCSEARGAADYLAIARHFHTVIVVAIPRLGPELRNETARFITLIDA
LYEHKVKLIATADAEPAALYDWQGKGDEEGRFMFDRTVSRLMEMQSQDYLALGHGED

Sequences:

>Translated_377_residues
MTSVLQRYHELVAAGELRPDAEQAAAAARLDTLQRELEAPAPSGGFLSRLFGSKPPPAPRGLYMWGGVGRGKSMLMDLFH
DNLSVPAKRRAHFHEFMLDVHARLREERKKESGDPILPVAAAIAAETRVLCFDEMVVNNSADAMIMSRLFTALMIEGGVT
VVTTSNRAPQDLYKNGLNREHFLPFIALIESRLDVLTLNGPVDYRLERMKGVGTWHVPVGPASTEAVREAFFRLTDYPPE
DSDHVPSCDLDVGGGRLLHVPKSLKGVGVFSFKRLCSEARGAADYLAIARHFHTVIVVAIPRLGPELRNETARFITLIDA
LYEHKVKLIATADAEPAALYDWQGKGDEEGRFMFDRTVSRLMEMQSQDYLALGHGED
>Mature_376_residues
TSVLQRYHELVAAGELRPDAEQAAAAARLDTLQRELEAPAPSGGFLSRLFGSKPPPAPRGLYMWGGVGRGKSMLMDLFHD
NLSVPAKRRAHFHEFMLDVHARLREERKKESGDPILPVAAAIAAETRVLCFDEMVVNNSADAMIMSRLFTALMIEGGVTV
VTTSNRAPQDLYKNGLNREHFLPFIALIESRLDVLTLNGPVDYRLERMKGVGTWHVPVGPASTEAVREAFFRLTDYPPED
SDHVPSCDLDVGGGRLLHVPKSLKGVGVFSFKRLCSEARGAADYLAIARHFHTVIVVAIPRLGPELRNETARFITLIDAL
YEHKVKLIATADAEPAALYDWQGKGDEEGRFMFDRTVSRLMEMQSQDYLALGHGED

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=407, Percent_Identity=35.1351351351351, Blast_Score=237, Evalue=1e-62,
Organism=Escherichia coli, GI1789627, Length=383, Percent_Identity=38.1201044386423, Blast_Score=229, Evalue=3e-61,
Organism=Caenorhabditis elegans, GI17505769, Length=414, Percent_Identity=35.9903381642512, Blast_Score=238, Evalue=3e-63,
Organism=Saccharomyces cerevisiae, GI6320783, Length=473, Percent_Identity=33.615221987315, Blast_Score=200, Evalue=3e-52,
Organism=Drosophila melanogaster, GI20129913, Length=426, Percent_Identity=33.0985915492958, Blast_Score=213, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 41775; Mature: 41644

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVLQRYHELVAAGELRPDAEQAAAAARLDTLQRELEAPAPSGGFLSRLFGSKPPPAPR
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCC
GLYMWGGVGRGKSMLMDLFHDNLSVPAKRRAHFHEFMLDVHARLREERKKESGDPILPVA
CEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AAIAAETRVLCFDEMVVNNSADAMIMSRLFTALMIEGGVTVVTTSNRAPQDLYKNGLNRE
HHHHHHHHHEEEHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCHH
HFLPFIALIESRLDVLTLNGPVDYRLERMKGVGTWHVPVGPASTEAVREAFFRLTDYPPE
HHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
DSDHVPSCDLDVGGGRLLHVPKSLKGVGVFSFKRLCSEARGAADYLAIARHFHTVIVVAI
CCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEE
PRLGPELRNETARFITLIDALYEHKVKLIATADAEPAALYDWQGKGDEEGRFMFDRTVSR
CCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHH
LMEMQSQDYLALGHGED
HHHHCCCCEEEECCCCC
>Mature Secondary Structure 
TSVLQRYHELVAAGELRPDAEQAAAAARLDTLQRELEAPAPSGGFLSRLFGSKPPPAPR
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCC
GLYMWGGVGRGKSMLMDLFHDNLSVPAKRRAHFHEFMLDVHARLREERKKESGDPILPVA
CEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AAIAAETRVLCFDEMVVNNSADAMIMSRLFTALMIEGGVTVVTTSNRAPQDLYKNGLNRE
HHHHHHHHHEEEHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCHH
HFLPFIALIESRLDVLTLNGPVDYRLERMKGVGTWHVPVGPASTEAVREAFFRLTDYPPE
HHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
DSDHVPSCDLDVGGGRLLHVPKSLKGVGVFSFKRLCSEARGAADYLAIARHFHTVIVVAI
CCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEE
PRLGPELRNETARFITLIDALYEHKVKLIATADAEPAALYDWQGKGDEEGRFMFDRTVSR
CCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHH
LMEMQSQDYLALGHGED
HHHHCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]