| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200337
Identifier: 87200337
GI number: 87200337
Start: 2467191
End: 2467655
Strand: Direct
Name: 87200337
Synonym: Saro_2323
Alternate gene names: NA
Gene position: 2467191-2467655 (Clockwise)
Preceding gene: 87200336
Following gene: 87200338
Centisome position: 69.27
GC content: 69.89
Gene sequence:
>465_bases GTGAGCGAGGCAGCCTTCCGCTACGAACCAGCCGCGGATCACTCCGGCTGGTTCACCTGGAACCTCACCGACGAGACCCG GTTCAACGCCCAGGTAATGGGCCGGATGCTCACCCGGATCGAGGACGGCGCGGATGGCGTCCGCCGGGCGCGGCTGCGCA TGCTGCCTGAACGGCGGCACTCCAACCTGCTCGACGCGGTGCACGGCGGCGTCACCCTCGCCCTCATCGACATCGCGCTC TTCGCGGCCATGCGGACCCTGCTGGAAGGCGACGCCGCCGGCTCGGTCACGCTCGACCTCTCCACCCAGTTCATCGGCGC CGGCCGCGTGGGCGACCCCCTCGACGCAGTGGTCGAAGTCCTGCGCGAGACTGGCCGCCTCGTCTTCCTGCGCGGCCTCG TCGTCCAGGGCGACGACACGATCGCCGCCTTCAACGGCACGATCCGCAAGCCGACGAAACGATGA
Upstream 100 bases:
>100_bases ACCATCATGAACTGCGCCAACGTCTGCCCGAAGGGCCTGTCGCCGGCGCGCGCGATTGCCGAAATCAAGAAGATGCAGGC CGAGCGTCTCGTCTGATCCG
Downstream 100 bases:
>100_bases CCTCGGTCCTCCAGCGCTATCACGAACTCGTCGCCGCCGGCGAACTGCGGCCGGACGCGGAGCAGGCGGCCGCCGCCGCA AGGCTCGATACGCTCCAGCG
Product: phenylacetic acid degradation-like protein
Products: NA
Alternate protein names: Phenylacetic Acid Degradation-Related Protein
Number of amino acids: Translated: 154; Mature: 153
Protein sequence:
>154_residues MSEAAFRYEPAADHSGWFTWNLTDETRFNAQVMGRMLTRIEDGADGVRRARLRMLPERRHSNLLDAVHGGVTLALIDIAL FAAMRTLLEGDAAGSVTLDLSTQFIGAGRVGDPLDAVVEVLRETGRLVFLRGLVVQGDDTIAAFNGTIRKPTKR
Sequences:
>Translated_154_residues MSEAAFRYEPAADHSGWFTWNLTDETRFNAQVMGRMLTRIEDGADGVRRARLRMLPERRHSNLLDAVHGGVTLALIDIAL FAAMRTLLEGDAAGSVTLDLSTQFIGAGRVGDPLDAVVEVLRETGRLVFLRGLVVQGDDTIAAFNGTIRKPTKR >Mature_153_residues SEAAFRYEPAADHSGWFTWNLTDETRFNAQVMGRMLTRIEDGADGVRRARLRMLPERRHSNLLDAVHGGVTLALIDIALF AAMRTLLEGDAAGSVTLDLSTQFIGAGRVGDPLDAVVEVLRETGRLVFLRGLVVQGDDTIAAFNGTIRKPTKR
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16896; Mature: 16764
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEAAFRYEPAADHSGWFTWNLTDETRFNAQVMGRMLTRIEDGADGVRRARLRMLPERRH CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHH SNLLDAVHGGVTLALIDIALFAAMRTLLEGDAAGSVTLDLSTQFIGAGRVGDPLDAVVEV HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEECCCCCCHHHHHHHH LRETGRLVFLRGLVVQGDDTIAAFNGTIRKPTKR HHHCCCEEEEEEEEEECCCEEEECCCCCCCCCCC >Mature Secondary Structure SEAAFRYEPAADHSGWFTWNLTDETRFNAQVMGRMLTRIEDGADGVRRARLRMLPERRH CCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHH SNLLDAVHGGVTLALIDIALFAAMRTLLEGDAAGSVTLDLSTQFIGAGRVGDPLDAVVEV HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEECCCCCCHHHHHHHH LRETGRLVFLRGLVVQGDDTIAAFNGTIRKPTKR HHHCCCEEEEEEEEEECCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA