Click here to switch to the map view.

The map label for this gene is 87200298

Identifier: 87200298

GI number: 87200298

Start: 2424892

End: 2426544

Strand: Reverse

Name: 87200298

Synonym: Saro_2284

Alternate gene names: NA

Gene position: 2426544-2424892 (Counterclockwise)

Preceding gene: 87200299

Following gene: 87200297

Centisome position: 68.13

GC content: 64.25

Gene sequence:

>1653_bases
GTGAAGTCTGCCAAGGAACTGCTTTTCCTCGCCTTGGGTGGTTCGGGCGAGATCGGGATGAACGTCAACCTCTATTGCTG
CGACGGCAAGTGGCTGATGGTCGATCTCGGGATGACGTTTGCCGATCCCTATTATCCGGGTATCGACCTGGTGTTCGCGG
ACCTGGAGTTCATCGAGGAGCGGCTGGACGATCTTGTCGGCATCGTTCTTACCCACGCGCACGAAGACCATATCGGCGCG
GTGCCCTATTTCGCGCAGGACCTTGGCGTGCCGCTCTATGCGACGCCGTTCACCGCGAAGCTGGTGCACGAGAAGCTGCT
CGAGGCGGGGATCGAGAAGGAGGTCGAGCTTAACGTCATCGATCACCTCGATCCGTTCCAGCTCGGCCCGTTCGGCCTGC
GCTACATTCCGCTGGCCCACTCGATCGCCGAAGGCAATGCGCTGCTGATCGATACGCCGCATGGCAGGATTTTCCACACC
GGCGACTGGAAGCTGGACGACGAGCCACGCATCGGCACTCCGGCCACCGAAGAGGAACTGACCGCCATCGGCGATGAGGG
CGTGCTCGCGCTGGTCTGCGATTCTACCAACGTGTTCAATCCAAACCCTTCCGGTTCCGAAGGTGCTGTGCGGGCGGGCC
TGCTTGAAGCCGTGGCCGCGCAAAAGGGGCGCCGGGTGGTGGTCACCACGTTCGCGTCGAACGTGGCCCGCTTGCAGACG
CTGGGCGAAGTGGCGGAAGCGACCGGGCGGCGTGTCTGCGTCGCAGGGCGCTCGCTCGACCGGATCATCCGCGTCGCGCA
GTCGTGCGGCTATCTCAAGAATTTTCCCGAAACCGTGCACATGGACGATGCGATGGACCTGCCGCGAGGCGAGTTGCTCG
TCCTGGCGACGGGAGGGCAGGGCGAACCGCGCGCGGCGCTGGCGCGCATTGCGGCGGACCAGCATCCGGTCAAGCTTGAG
AAGGGCGACGCGGTGCTTTTCTCGACGCGCCAGATTCCGGGCAACGAGCTTGCCATCGGCCGCGTCCAGAACGCGCTGGT
GGAAAAGGGCGTGCGGATCGTGACCGACCGGCAGTCGATGATCCATGTTTCCGGACATCCGGGACGGCCCGAACTGATGG
CGCTCTACGAGTGGCTGCGGCCCGAAATCCTCGTGCCCGTCCATGGCGAGATCCGGCACATGGCCGAACAGGCGCAACTC
GGTCTGGACGAAGGCATACCCAAGGCAATCGTCCAGAAGAACGGCGATCTCATCCGCCTTGCCCCCAATGGTCCGAAGAA
GCTGTCCGAGGAACGCGCGGGACGCCTCGTGCTGGACGGCGACATCATCTCCCCCGCCGATGGCGAAGCGGTTGCCGCAA
GGCGGAAGCTGGGAGCCAACGGGCTGATTACCGTTGCGCTGGCAGTACGGCTCGATGGCCATCTGGTCAGTGACGTCGAC
ATTGCCACGATCGGCATCCCGCTCGACGAAGACATGGAAGCCTTCATGGCCGAAGCGAAGGTCGAGGCGGCAGAAACGGT
GCGCAATCTGAAGGGCGACCGTCGCCGCGACAGGTTCGCCGTTGCCGAAGCCGTGCGCCTTGCGGTAAGGCGCACGGGCC
AGCGCTGGTCCGGCAAGAAGCCGGTTGTCCAGGTCCTGCTGCGGGAAGGCTGA

Upstream 100 bases:

>100_bases
TTGCGGTACTTTTCGGCGACCATACCGACATATTCGATCACGTGGACACCGACCTTACGCTCGATGGCCTTGCGATCCTC
GCGGAGCGGGTGACTGTCCA

Downstream 100 bases:

>100_bases
CTCGCGTGAAGTGGACGTCGATCATTGCCATTTACGGGCTGTTCTGGGTCATGGCGGCGTTCATCGTCCTGCCCTTTGGC
GTACGCACCCACGACGAACT

Product: beta-lactamase-like protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MKSAKELLFLALGGSGEIGMNVNLYCCDGKWLMVDLGMTFADPYYPGIDLVFADLEFIEERLDDLVGIVLTHAHEDHIGA
VPYFAQDLGVPLYATPFTAKLVHEKLLEAGIEKEVELNVIDHLDPFQLGPFGLRYIPLAHSIAEGNALLIDTPHGRIFHT
GDWKLDDEPRIGTPATEEELTAIGDEGVLALVCDSTNVFNPNPSGSEGAVRAGLLEAVAAQKGRRVVVTTFASNVARLQT
LGEVAEATGRRVCVAGRSLDRIIRVAQSCGYLKNFPETVHMDDAMDLPRGELLVLATGGQGEPRAALARIAADQHPVKLE
KGDAVLFSTRQIPGNELAIGRVQNALVEKGVRIVTDRQSMIHVSGHPGRPELMALYEWLRPEILVPVHGEIRHMAEQAQL
GLDEGIPKAIVQKNGDLIRLAPNGPKKLSEERAGRLVLDGDIISPADGEAVAARRKLGANGLITVALAVRLDGHLVSDVD
IATIGIPLDEDMEAFMAEAKVEAAETVRNLKGDRRRDRFAVAEAVRLAVRRTGQRWSGKKPVVQVLLREG

Sequences:

>Translated_550_residues
MKSAKELLFLALGGSGEIGMNVNLYCCDGKWLMVDLGMTFADPYYPGIDLVFADLEFIEERLDDLVGIVLTHAHEDHIGA
VPYFAQDLGVPLYATPFTAKLVHEKLLEAGIEKEVELNVIDHLDPFQLGPFGLRYIPLAHSIAEGNALLIDTPHGRIFHT
GDWKLDDEPRIGTPATEEELTAIGDEGVLALVCDSTNVFNPNPSGSEGAVRAGLLEAVAAQKGRRVVVTTFASNVARLQT
LGEVAEATGRRVCVAGRSLDRIIRVAQSCGYLKNFPETVHMDDAMDLPRGELLVLATGGQGEPRAALARIAADQHPVKLE
KGDAVLFSTRQIPGNELAIGRVQNALVEKGVRIVTDRQSMIHVSGHPGRPELMALYEWLRPEILVPVHGEIRHMAEQAQL
GLDEGIPKAIVQKNGDLIRLAPNGPKKLSEERAGRLVLDGDIISPADGEAVAARRKLGANGLITVALAVRLDGHLVSDVD
IATIGIPLDEDMEAFMAEAKVEAAETVRNLKGDRRRDRFAVAEAVRLAVRRTGQRWSGKKPVVQVLLREG
>Mature_550_residues
MKSAKELLFLALGGSGEIGMNVNLYCCDGKWLMVDLGMTFADPYYPGIDLVFADLEFIEERLDDLVGIVLTHAHEDHIGA
VPYFAQDLGVPLYATPFTAKLVHEKLLEAGIEKEVELNVIDHLDPFQLGPFGLRYIPLAHSIAEGNALLIDTPHGRIFHT
GDWKLDDEPRIGTPATEEELTAIGDEGVLALVCDSTNVFNPNPSGSEGAVRAGLLEAVAAQKGRRVVVTTFASNVARLQT
LGEVAEATGRRVCVAGRSLDRIIRVAQSCGYLKNFPETVHMDDAMDLPRGELLVLATGGQGEPRAALARIAADQHPVKLE
KGDAVLFSTRQIPGNELAIGRVQNALVEKGVRIVTDRQSMIHVSGHPGRPELMALYEWLRPEILVPVHGEIRHMAEQAQL
GLDEGIPKAIVQKNGDLIRLAPNGPKKLSEERAGRLVLDGDIISPADGEAVAARRKLGANGLITVALAVRLDGHLVSDVD
IATIGIPLDEDMEAFMAEAKVEAAETVRNLKGDRRRDRFAVAEAVRLAVRRTGQRWSGKKPVVQVLLREG

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 59637; Mature: 59637

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSAKELLFLALGGSGEIGMNVNLYCCDGKWLMVDLGMTFADPYYPGIDLVFADLEFIEE
CCCCCEEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCHHEEHHHHHHHHH
RLDDLVGIVLTHAHEDHIGAVPYFAQDLGVPLYATPFTAKLVHEKLLEAGIEKEVELNVI
HHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEE
DHLDPFQLGPFGLRYIPLAHSIAEGNALLIDTPHGRIFHTGDWKLDDEPRIGTPATEEEL
CCCCCCCCCCCCEEEEEHHHHHCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHH
TAIGDEGVLALVCDSTNVFNPNPSGSEGAVRAGLLEAVAAQKGRRVVVTTFASNVARLQT
HHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH
LGEVAEATGRRVCVAGRSLDRIIRVAQSCGYLKNFPETVHMDDAMDLPRGELLVLATGGQ
HHHHHHHCCCEEEEECCCHHHHHHHHHHCCHHHCCCCEEECCCCCCCCCCCEEEEEECCC
GEPRAALARIAADQHPVKLEKGDAVLFSTRQIPGNELAIGRVQNALVEKGVRIVTDRQSM
CCHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCCEEHHHHHHHHHHCCCEEEECCCEE
IHVSGHPGRPELMALYEWLRPEILVPVHGEIRHMAEQAQLGLDEGIPKAIVQKNGDLIRL
EEECCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEE
APNGPKKLSEERAGRLVLDGDIISPADGEAVAARRKLGANGLITVALAVRLDGHLVSDVD
CCCCCHHHHHHHCCEEEEECCEECCCCCHHHHHHHHCCCCCEEEEEEEEEECCEEECCCC
IATIGIPLDEDMEAFMAEAKVEAAETVRNLKGDRRRDRFAVAEAVRLAVRRTGQRWSGKK
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PVVQVLLREG
HHHHHHCCCC
>Mature Secondary Structure
MKSAKELLFLALGGSGEIGMNVNLYCCDGKWLMVDLGMTFADPYYPGIDLVFADLEFIEE
CCCCCEEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCHHEEHHHHHHHHH
RLDDLVGIVLTHAHEDHIGAVPYFAQDLGVPLYATPFTAKLVHEKLLEAGIEKEVELNVI
HHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEE
DHLDPFQLGPFGLRYIPLAHSIAEGNALLIDTPHGRIFHTGDWKLDDEPRIGTPATEEEL
CCCCCCCCCCCCEEEEEHHHHHCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHH
TAIGDEGVLALVCDSTNVFNPNPSGSEGAVRAGLLEAVAAQKGRRVVVTTFASNVARLQT
HHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH
LGEVAEATGRRVCVAGRSLDRIIRVAQSCGYLKNFPETVHMDDAMDLPRGELLVLATGGQ
HHHHHHHCCCEEEEECCCHHHHHHHHHHCCHHHCCCCEEECCCCCCCCCCCEEEEEECCC
GEPRAALARIAADQHPVKLEKGDAVLFSTRQIPGNELAIGRVQNALVEKGVRIVTDRQSM
CCHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCCEEHHHHHHHHHHCCCEEEECCCEE
IHVSGHPGRPELMALYEWLRPEILVPVHGEIRHMAEQAQLGLDEGIPKAIVQKNGDLIRL
EEECCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEE
APNGPKKLSEERAGRLVLDGDIISPADGEAVAARRKLGANGLITVALAVRLDGHLVSDVD
CCCCCHHHHHHHCCEEEEECCEECCCCCHHHHHHHHCCCCCEEEEEEEEEECCEEECCCC
IATIGIPLDEDMEAFMAEAKVEAAETVRNLKGDRRRDRFAVAEAVRLAVRRTGQRWSGKK
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PVVQVLLREG
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]