| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is phoU [H]
Identifier: 87200294
GI number: 87200294
Start: 2421536
End: 2422222
Strand: Direct
Name: phoU [H]
Synonym: Saro_2280
Alternate gene names: 87200294
Gene position: 2421536-2422222 (Clockwise)
Preceding gene: 87200293
Following gene: 87200295
Centisome position: 67.99
GC content: 62.74
Gene sequence:
>687_bases ATGATGGCCGAACATACCGTCAAGGCATTCGACGAGGACATCACCCGGCTGCGCGGCCTGGTTGCGGAAATGGGCGGGCT TGCCGAGCTTTCGGTGACCGAGGCTATGGACGCCCTGATACGCGGCGACCACGAGCTTGCTGCCGGCGTGATCGCTCGCG ACAAGCGGATCGATCAGCTCGAGGCCGAAGTCGACAAGCTTGCCATCCGCGTTCTGGCCCTGCGCGCACCCATGGCGGAC GACCTTCGCGAAGTGGTGGCGGCGCTCAAGATCGCCGGCGTGATCGAGCGTATCGGCGACTATGCCAAGAACATCGCCAA GCGGGTCGGCATCATCGAAGGGCGTCGCCGCTTCGAACCGCTGACGCTGATCCCTGCGATGAACGACCTTGCCGCAGAAA TGGTCCACGACGTGATGACCGCGTTCGCCGCGCGCGATCCGGCCGCCGCGACCGAGATCGTGCAGCGGGATGAAAAGGTC GACGCGTTCTACGATTCCATCTTCCGCAACCTGATCTCGTTCATGGTCGAAGACCCGGCGACCATCAGCAGCGCGGCGCA GTTGCTGTTCGTTGCGCGCAACATCGAGCGTATTGGCGATCACGCAACCAATATCGCGGAAATGGTGTACTACGCTGCAA CAGGCGCCAACTTGCCAGAGCGCGAAGAAGTGATTCCCCCCGCCTAG
Upstream 100 bases:
>100_bases CAAGATAGTGGAATACGGCAAGACTTCCGACATCTTCACCAATCCGCGCGAGGAACGGACGAAGGACTACATCACCGGTC GCTACGGTTAAGGGAAAGAG
Downstream 100 bases:
>100_bases TGGATTGATTCCGGCATTTGCCCGCGCCCTGCCCAAAAGGGTGCCAAATGTCGGAATCGGACCATCAGGGACGATCACCC GGGTGTTCGTCACACGACCG
Product: phosphate uptake regulator PhoU
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 228; Mature: 228
Protein sequence:
>228_residues MMAEHTVKAFDEDITRLRGLVAEMGGLAELSVTEAMDALIRGDHELAAGVIARDKRIDQLEAEVDKLAIRVLALRAPMAD DLREVVAALKIAGVIERIGDYAKNIAKRVGIIEGRRRFEPLTLIPAMNDLAAEMVHDVMTAFAARDPAAATEIVQRDEKV DAFYDSIFRNLISFMVEDPATISSAAQLLFVARNIERIGDHATNIAEMVYYAATGANLPEREEVIPPA
Sequences:
>Translated_228_residues MMAEHTVKAFDEDITRLRGLVAEMGGLAELSVTEAMDALIRGDHELAAGVIARDKRIDQLEAEVDKLAIRVLALRAPMAD DLREVVAALKIAGVIERIGDYAKNIAKRVGIIEGRRRFEPLTLIPAMNDLAAEMVHDVMTAFAARDPAAATEIVQRDEKV DAFYDSIFRNLISFMVEDPATISSAAQLLFVARNIERIGDHATNIAEMVYYAATGANLPEREEVIPPA >Mature_228_residues MMAEHTVKAFDEDITRLRGLVAEMGGLAELSVTEAMDALIRGDHELAAGVIARDKRIDQLEAEVDKLAIRVLALRAPMAD DLREVVAALKIAGVIERIGDYAKNIAKRVGIIEGRRRFEPLTLIPAMNDLAAEMVHDVMTAFAARDPAAATEIVQRDEKV DAFYDSIFRNLISFMVEDPATISSAAQLLFVARNIERIGDHATNIAEMVYYAATGANLPEREEVIPPA
Specific function: Not known; probably involved in phosphate transport and/or metabolism [H]
COG id: COG0704
COG function: function code P; Phosphate uptake regulator
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phoU family [H]
Homologues:
Organism=Escherichia coli, GI1790161, Length=218, Percent_Identity=35.7798165137615, Blast_Score=142, Evalue=1e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008170 [H]
Pfam domain/function: PF01895 PhoU [H]
EC number: NA
Molecular weight: Translated: 24998; Mature: 24998
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMAEHTVKAFDEDITRLRGLVAEMGGLAELSVTEAMDALIRGDHELAAGVIARDKRIDQL CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH EAEVDKLAIRVLALRAPMADDLREVVAALKIAGVIERIGDYAKNIAKRVGIIEGRRRFEP HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LTLIPAMNDLAAEMVHDVMTAFAARDPAAATEIVQRDEKVDAFYDSIFRNLISFMVEDPA CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH TISSAAQLLFVARNIERIGDHATNIAEMVYYAATGANLPEREEVIPPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MMAEHTVKAFDEDITRLRGLVAEMGGLAELSVTEAMDALIRGDHELAAGVIARDKRIDQL CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH EAEVDKLAIRVLALRAPMADDLREVVAALKIAGVIERIGDYAKNIAKRVGIIEGRRRFEP HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LTLIPAMNDLAAEMVHDVMTAFAARDPAAATEIVQRDEKVDAFYDSIFRNLISFMVEDPA CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH TISSAAQLLFVARNIERIGDHATNIAEMVYYAATGANLPEREEVIPPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA