| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200285
Identifier: 87200285
GI number: 87200285
Start: 2410645
End: 2411385
Strand: Reverse
Name: 87200285
Synonym: Saro_2271
Alternate gene names: NA
Gene position: 2411385-2410645 (Counterclockwise)
Preceding gene: 87200286
Following gene: 87200284
Centisome position: 67.71
GC content: 66.26
Gene sequence:
>741_bases GTGGACGCTAGTGATCAGTCGACCGACTGCGCGCCACTTGCTGCCCTTTTCTACGCGCCGGATGGGGTCCCTTCGCTGGC GTCCATCCGGTCGGCGCTTTCGCCCGCCTTGCGCTTCTCGATCAGCAATGCGCCCGACGAATCGGAAGGCTGGGTCGAAC TCCTGCGCGAAGGCCTGACGTTCGACCTGCGCGGCCTTGCTGGCGGGCCGCCGTGCGCCTTTCCGAATATCGGCGGCAGT CTTGGCATCGGCGAAGCTGAAGTGCGGGCGCTGACGCCGCTTCTGCTTGCGCCCGGACCCCATCTGGCGGGCGCCGGGCG GCTTCTTCCGGTGATTCGCGGCGCGGTCGGACTCCTCGTGGACCTCGCGCGAATCAGCGGCGCTGCGGCAATTTCGTGGC TTCCCTCGCGTTCTGCGCTTGCGCCTGCCCTTTTCGAGAGGGCAGTGCAGCCCTGGCTGGACGGCGGACCCTTTCCCGCT CTGGCGCTCACCGCGCTCCATCGCGAGGATGGCGGCGGGGTCCGTAGTGAGGGGCTCAAGTTCCTGATGGGGCAAGAGTT TCTTCTCGAACCTAAACCTAGTTCCACAGGCGATCACACCCTGCGGGTTGCGGTGCGGCTGGTTGATTGGCTTGTCGCCC ACGGGCCGGTCACTGCGCCGGTCGAGGCAATTCTTGCCGGAACGGGAGCAGTCCTTCTTGAGGCGCCCGAATGGGATCGT ATCGTTGCGAGGTGCTGCTGA
Upstream 100 bases:
>100_bases TCTCGCGCTATGATCGGTTACGGAGCATTCGTGATCTGGGCACGGACTCGACGGCAGTGCCGCGGTCGTGCAAATTCTCG GCGGAACGAAAGGGATGAAC
Downstream 100 bases:
>100_bases ACCGGAAAGACGTTGGGGAAAACCGCAGGATGCTGCCGTTCGGCAGCGTCAACGTCCCCGGTCAGCCTGGCTACTCGCCC GATCTGCAGCGCCATCATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MDASDQSTDCAPLAALFYAPDGVPSLASIRSALSPALRFSISNAPDESEGWVELLREGLTFDLRGLAGGPPCAFPNIGGS LGIGEAEVRALTPLLLAPGPHLAGAGRLLPVIRGAVGLLVDLARISGAAAISWLPSRSALAPALFERAVQPWLDGGPFPA LALTALHREDGGGVRSEGLKFLMGQEFLLEPKPSSTGDHTLRVAVRLVDWLVAHGPVTAPVEAILAGTGAVLLEAPEWDR IVARCC
Sequences:
>Translated_246_residues MDASDQSTDCAPLAALFYAPDGVPSLASIRSALSPALRFSISNAPDESEGWVELLREGLTFDLRGLAGGPPCAFPNIGGS LGIGEAEVRALTPLLLAPGPHLAGAGRLLPVIRGAVGLLVDLARISGAAAISWLPSRSALAPALFERAVQPWLDGGPFPA LALTALHREDGGGVRSEGLKFLMGQEFLLEPKPSSTGDHTLRVAVRLVDWLVAHGPVTAPVEAILAGTGAVLLEAPEWDR IVARCC >Mature_246_residues MDASDQSTDCAPLAALFYAPDGVPSLASIRSALSPALRFSISNAPDESEGWVELLREGLTFDLRGLAGGPPCAFPNIGGS LGIGEAEVRALTPLLLAPGPHLAGAGRLLPVIRGAVGLLVDLARISGAAAISWLPSRSALAPALFERAVQPWLDGGPFPA LALTALHREDGGGVRSEGLKFLMGQEFLLEPKPSSTGDHTLRVAVRLVDWLVAHGPVTAPVEAILAGTGAVLLEAPEWDR IVARCC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25500; Mature: 25500
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDASDQSTDCAPLAALFYAPDGVPSLASIRSALSPALRFSISNAPDESEGWVELLREGLT CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCC FDLRGLAGGPPCAFPNIGGSLGIGEAEVRALTPLLLAPGPHLAGAGRLLPVIRGAVGLLV EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH DLARISGAAAISWLPSRSALAPALFERAVQPWLDGGPFPALALTALHREDGGGVRSEGLK HHHHHCCCHHEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHH FLMGQEFLLEPKPSSTGDHTLRVAVRLVDWLVAHGPVTAPVEAILAGTGAVLLEAPEWDR HHHCCHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCHHH IVARCC HHHHCC >Mature Secondary Structure MDASDQSTDCAPLAALFYAPDGVPSLASIRSALSPALRFSISNAPDESEGWVELLREGLT CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCC FDLRGLAGGPPCAFPNIGGSLGIGEAEVRALTPLLLAPGPHLAGAGRLLPVIRGAVGLLV EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH DLARISGAAAISWLPSRSALAPALFERAVQPWLDGGPFPALALTALHREDGGGVRSEGLK HHHHHCCCHHEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHH FLMGQEFLLEPKPSSTGDHTLRVAVRLVDWLVAHGPVTAPVEAILAGTGAVLLEAPEWDR HHHCCHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCHHH IVARCC HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA