| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200192
Identifier: 87200192
GI number: 87200192
Start: 2320276
End: 2321145
Strand: Reverse
Name: 87200192
Synonym: Saro_2176
Alternate gene names: NA
Gene position: 2321145-2320276 (Counterclockwise)
Preceding gene: 87200193
Following gene: 87200191
Centisome position: 65.17
GC content: 57.59
Gene sequence:
>870_bases ATGGACAGCGATTCGGGATTGCGACGCGGGGTTGAGAGCCGCCTCGAATTCATCGAATTTAGGCTCTTCTGGGAAGGGCA TGTCAACCGGAGTGACCTGATCGAAGTTTTCGGCGTTTCGATCAACCAAGCTTCGACGGATCTGAACAGATATCTCGGCC TGGCTGAAGCCAACATGGTCTACGACAAGAGCGCCAGGACTTATGTTCGTAGCTCGACATTCACGCCCGTATTTCACCAG CCCGACGCATCCCAATATCTCTCCCAGCTCAGATCGCTCTCGGATGGGATCATTGCCGCCGACGACAGCTGGATCGGAGG TTTGCCGAGTTTCGCCTGTGTCCCGACTCCCGCCCGCGGTGTCTCGTCCAAAATTCTGAGGGCCATCGTAACGGCGATCA AGCGGCACGAGGCGATCGAGGTTTTCTACCAATCGATGTCATCCCCTGAGCCCGCTTGGCGGTGGATCGAACCTCATGCC TTGGTGTTTGACGGCTTCAGATGGCATGCTCGGGCGCATTGCCCACGCAGTAGCGCCTTCAAGGATTTTGTTCTCTCGCG CATCACCGATACGCGTTCATCAAAGCCGGCAGAAGCTAGGCCTTCCGGCGATCGCGAATGGGAGGAGCATGTTGAGCTGC AGATCGCGCCTCATCCCGCGCTGAGCGCTGGTCAGCGCAAGGCGATCGAGCTCGATTACGGAATGGAAAGGGGCGTGACG ACCATCCCGGTGCGGCGGGCTCTCCTCTACTACGCATTGAAGCGCCTTGGATTGGATACCGATCCGGCAGCACGTAGCCC CCAGGACCAGCAGATTGTTCTATTGAACTGCCGCAACATCGACATCGGTTCGAAGGGTGTCATCGAATAG
Upstream 100 bases:
>100_bases GGGCAAGCAGCTTTCCGAATCTCGTTGCCTCGCCATCAAGCATCCACTACGCTTACCCATACAGAAACTGGTTTAGCCCA GTTTCTTGGGGGATCTGGCG
Downstream 100 bases:
>100_bases TGCTATACATCGGATTTTTGTTTCGGATTTCTATTAAGTTTCCGCCATTCTAATCTGTGTCTGGTTCGAGTTTGTGTAAA TCTGCCTCGCATCGGTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MDSDSGLRRGVESRLEFIEFRLFWEGHVNRSDLIEVFGVSINQASTDLNRYLGLAEANMVYDKSARTYVRSSTFTPVFHQ PDASQYLSQLRSLSDGIIAADDSWIGGLPSFACVPTPARGVSSKILRAIVTAIKRHEAIEVFYQSMSSPEPAWRWIEPHA LVFDGFRWHARAHCPRSSAFKDFVLSRITDTRSSKPAEARPSGDREWEEHVELQIAPHPALSAGQRKAIELDYGMERGVT TIPVRRALLYYALKRLGLDTDPAARSPQDQQIVLLNCRNIDIGSKGVIE
Sequences:
>Translated_289_residues MDSDSGLRRGVESRLEFIEFRLFWEGHVNRSDLIEVFGVSINQASTDLNRYLGLAEANMVYDKSARTYVRSSTFTPVFHQ PDASQYLSQLRSLSDGIIAADDSWIGGLPSFACVPTPARGVSSKILRAIVTAIKRHEAIEVFYQSMSSPEPAWRWIEPHA LVFDGFRWHARAHCPRSSAFKDFVLSRITDTRSSKPAEARPSGDREWEEHVELQIAPHPALSAGQRKAIELDYGMERGVT TIPVRRALLYYALKRLGLDTDPAARSPQDQQIVLLNCRNIDIGSKGVIE >Mature_289_residues MDSDSGLRRGVESRLEFIEFRLFWEGHVNRSDLIEVFGVSINQASTDLNRYLGLAEANMVYDKSARTYVRSSTFTPVFHQ PDASQYLSQLRSLSDGIIAADDSWIGGLPSFACVPTPARGVSSKILRAIVTAIKRHEAIEVFYQSMSSPEPAWRWIEPHA LVFDGFRWHARAHCPRSSAFKDFVLSRITDTRSSKPAEARPSGDREWEEHVELQIAPHPALSAGQRKAIELDYGMERGVT TIPVRRALLYYALKRLGLDTDPAARSPQDQQIVLLNCRNIDIGSKGVIE
Specific function: Unknown
COG id: COG2378
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32473; Mature: 32473
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSDSGLRRGVESRLEFIEFRLFWEGHVNRSDLIEVFGVSINQASTDLNRYLGLAEANMV CCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHE YDKSARTYVRSSTFTPVFHQPDASQYLSQLRSLSDGIIAADDSWIGGLPSFACVPTPARG ECCCHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCC VSSKILRAIVTAIKRHEAIEVFYQSMSSPEPAWRWIEPHALVFDGFRWHARAHCPRSSAF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEECCEEEEHHCCCCCHHHH KDFVLSRITDTRSSKPAEARPSGDREWEEHVELQIAPHPALSAGQRKAIELDYGMERGVT HHHHHHHHHHCCCCCCCCCCCCCCCCHHHCEEEEECCCCCCCCCCCEEEEECCCCCCCCE TIPVRRALLYYALKRLGLDTDPAARSPQDQQIVLLNCRNIDIGSKGVIE EHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC >Mature Secondary Structure MDSDSGLRRGVESRLEFIEFRLFWEGHVNRSDLIEVFGVSINQASTDLNRYLGLAEANMV CCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHE YDKSARTYVRSSTFTPVFHQPDASQYLSQLRSLSDGIIAADDSWIGGLPSFACVPTPARG ECCCHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCC VSSKILRAIVTAIKRHEAIEVFYQSMSSPEPAWRWIEPHALVFDGFRWHARAHCPRSSAF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEECCEEEEHHCCCCCHHHH KDFVLSRITDTRSSKPAEARPSGDREWEEHVELQIAPHPALSAGQRKAIELDYGMERGVT HHHHHHHHHHCCCCCCCCCCCCCCCCHHHCEEEEECCCCCCCCCCCEEEEECCCCCCCCE TIPVRRALLYYALKRLGLDTDPAARSPQDQQIVLLNCRNIDIGSKGVIE EHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA