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The map label for this gene is traU [H]

Identifier: 87200183

GI number: 87200183

Start: 2304768

End: 2305883

Strand: Direct

Name: traU [H]

Synonym: Saro_2167

Alternate gene names: 87200183

Gene position: 2304768-2305883 (Clockwise)

Preceding gene: 87200182

Following gene: 87200184

Centisome position: 64.71

GC content: 63.98

Gene sequence:

>1116_bases
ATGAGCAAGAAAAAACGCCTTCTGTCATGGCTTTGCGGAGCACTTCTGCTCACCAGCCTGAGCGTCGTATCCAGTGCTCC
TGCCCAGGCTGCGGCCGGCCCCGGGCGCTGCACTGGCAAGTTCGTCAATCCGATCACGGACATCTGCTGGTCGTGCCTGT
TTCCGATCTCGATCGGTGGCCTGAAGATCTGGCCGTCAAGCCGTCCCGATCCGAGCAACCCGGCTCTCCCTGTTTGCCTC
TGCGGTTTGCGGCCCGGCATCGCCATGGGGTTCTGGGAGCCGGTCCGGCTTGCCGACGTCAGCATGAAGCCATGGTGCTT
TGTCAATCTCGGCGGGATGAAGCTCGATCCGGGGTTCGACATCGGCTTCAAGTCGATGGCGGGGCCATCGGCGGTTGGCG
GCGCCACGCAGTACAACTCGCAGTGGCATGTCCACTGGTATGCCTACTGGTTCTACTGCGAGCGGCCCAAGACGCCGGAG
CAGAATTCGCCCTCGCCAGCACCTGCGGCCAGCGCGACCAGTCAACTTGATGCGATCACGGCGACGTTGCGCGAACTGAA
GGCCAAGGCGATCCTCGAGCCGACGCCGGCAAATGTGACGGCCTATATCCGGTTCCAGCGCGCGCAGCTCGACCGGGCAT
CGCTCTTCAGCGACGTCTGGCAGCGGGCGATCTGGCAGGATCCCGAGCTCGACTACACGCTGCAGCGCCCGGTCTCGACA
CTTGGCAAGCGCCAGTGGCAGGATTCGCGAAGCGCGGAACGGAACGCCGCGATGGCCCAGCTTTCCGAGCGCTACGGGCT
GTTCTACTTCTTCGCCCAGAGCTGCGGCGCTTGCGAAGTCATGTCGCCAATCGTGCAGAGCGTTGCCTCGACCTGGCATA
TCGCCGTGCGCGCGATTTCGACCGATGGCGGCCCGTCGCGGCATTTCCCGAACTACACGGTCGAGACCAACCAGCGCAGC
CGCATGGGGCTCGAGCCCAAGATCACGCCAGCGGTCGTGCTCTGGGACGCGCAGACCGGCCGCCCCATTCCGATCGGCTA
CGGCGTCATGAGCGCCGACGAGCTTCAGGACCGGATTTACCTCCTCACATCGAAGGAAGCTGGACGTGACTACTAG

Upstream 100 bases:

>100_bases
AACACTTTGGCATTCGCGCGGTGCCCGCAACCGTCGAGCAGCAGGGCCGCGCGCTCATCATCACCGAACAGCCCGTGCCT
CTCAAGGAGCGTGCGCCGTC

Downstream 100 bases:

>100_bases
GATGAAAAGAGCCATCGCTGCGCTTCTGGCAGCCGCCCTCCCCTTCGCCCTCCCGCTGTCTGGCGCATCGGCCGACGTCG
GCAGTTCGATGGACTCGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSKKKRLLSWLCGALLLTSLSVVSSAPAQAAAGPGRCTGKFVNPITDICWSCLFPISIGGLKIWPSSRPDPSNPALPVCL
CGLRPGIAMGFWEPVRLADVSMKPWCFVNLGGMKLDPGFDIGFKSMAGPSAVGGATQYNSQWHVHWYAYWFYCERPKTPE
QNSPSPAPAASATSQLDAITATLRELKAKAILEPTPANVTAYIRFQRAQLDRASLFSDVWQRAIWQDPELDYTLQRPVST
LGKRQWQDSRSAERNAAMAQLSERYGLFYFFAQSCGACEVMSPIVQSVASTWHIAVRAISTDGGPSRHFPNYTVETNQRS
RMGLEPKITPAVVLWDAQTGRPIPIGYGVMSADELQDRIYLLTSKEAGRDY

Sequences:

>Translated_371_residues
MSKKKRLLSWLCGALLLTSLSVVSSAPAQAAAGPGRCTGKFVNPITDICWSCLFPISIGGLKIWPSSRPDPSNPALPVCL
CGLRPGIAMGFWEPVRLADVSMKPWCFVNLGGMKLDPGFDIGFKSMAGPSAVGGATQYNSQWHVHWYAYWFYCERPKTPE
QNSPSPAPAASATSQLDAITATLRELKAKAILEPTPANVTAYIRFQRAQLDRASLFSDVWQRAIWQDPELDYTLQRPVST
LGKRQWQDSRSAERNAAMAQLSERYGLFYFFAQSCGACEVMSPIVQSVASTWHIAVRAISTDGGPSRHFPNYTVETNQRS
RMGLEPKITPAVVLWDAQTGRPIPIGYGVMSADELQDRIYLLTSKEAGRDY
>Mature_370_residues
SKKKRLLSWLCGALLLTSLSVVSSAPAQAAAGPGRCTGKFVNPITDICWSCLFPISIGGLKIWPSSRPDPSNPALPVCLC
GLRPGIAMGFWEPVRLADVSMKPWCFVNLGGMKLDPGFDIGFKSMAGPSAVGGATQYNSQWHVHWYAYWFYCERPKTPEQ
NSPSPAPAASATSQLDAITATLRELKAKAILEPTPANVTAYIRFQRAQLDRASLFSDVWQRAIWQDPELDYTLQRPVSTL
GKRQWQDSRSAERNAAMAQLSERYGLFYFFAQSCGACEVMSPIVQSVASTWHIAVRAISTDGGPSRHFPNYTVETNQRSR
MGLEPKITPAVVLWDAQTGRPIPIGYGVMSADELQDRIYLLTSKEAGRDY

Specific function: Appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments. Required for F plasmid conjugative transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009649 [H]

Pfam domain/function: PF06834 TraU [H]

EC number: NA

Molecular weight: Translated: 40889; Mature: 40758

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKKRLLSWLCGALLLTSLSVVSSAPAQAAAGPGRCTGKFVNPITDICWSCLFPISIGG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
LKIWPSSRPDPSNPALPVCLCGLRPGIAMGFWEPVRLADVSMKPWCFVNLGGMKLDPGFD
EEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCEEEEEECCEEECCCCC
IGFKSMAGPSAVGGATQYNSQWHVHWYAYWFYCERPKTPEQNSPSPAPAASATSQLDAIT
CCCHHCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
ATLRELKAKAILEPTPANVTAYIRFQRAQLDRASLFSDVWQRAIWQDPELDYTLQRPVST
HHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHH
LGKRQWQDSRSAERNAAMAQLSERYGLFYFFAQSCGACEVMSPIVQSVASTWHIAVRAIS
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHEEEEEEEEE
TDGGPSRHFPNYTVETNQRSRMGLEPKITPAVVLWDAQTGRPIPIGYGVMSADELQDRIY
CCCCCCCCCCCCEEECCCHHHCCCCCCCCCEEEEEECCCCCCCEECCCCCCHHHHCCEEE
LLTSKEAGRDY
EEECCCCCCCC
>Mature Secondary Structure 
SKKKRLLSWLCGALLLTSLSVVSSAPAQAAAGPGRCTGKFVNPITDICWSCLFPISIGG
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
LKIWPSSRPDPSNPALPVCLCGLRPGIAMGFWEPVRLADVSMKPWCFVNLGGMKLDPGFD
EEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCEEEEEECCEEECCCCC
IGFKSMAGPSAVGGATQYNSQWHVHWYAYWFYCERPKTPEQNSPSPAPAASATSQLDAIT
CCCHHCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
ATLRELKAKAILEPTPANVTAYIRFQRAQLDRASLFSDVWQRAIWQDPELDYTLQRPVST
HHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHH
LGKRQWQDSRSAERNAAMAQLSERYGLFYFFAQSCGACEVMSPIVQSVASTWHIAVRAIS
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHEEEEEEEEE
TDGGPSRHFPNYTVETNQRSRMGLEPKITPAVVLWDAQTGRPIPIGYGVMSADELQDRIY
CCCCCCCCCCCCEEECCCHHHCCCCCCCCCEEEEEECCCCCCCEECCCCCCHHHHCCEEE
LLTSKEAGRDY
EEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2198250; 7915817; 2050638; 1355084 [H]