Click here to switch to the map view.

The map label for this gene is traC [H]

Identifier: 87200178

GI number: 87200178

Start: 2300247

End: 2302790

Strand: Direct

Name: traC [H]

Synonym: Saro_2162

Alternate gene names: 87200178

Gene position: 2300247-2302790 (Clockwise)

Preceding gene: 87200177

Following gene: 87200179

Centisome position: 64.58

GC content: 64.47

Gene sequence:

>2544_bases
ATGGCCGAACAACTCAAGACCGTCGTCGATCGGCTGCTCAGCGGATTGCTGGGTGATGCCGAGCACGCCGACAAAGCCCG
CCCGCAGCTCATGGTCGACATGCTCTCCGACTGGCTCCCCTACCGGGTCTACGATCCGGCAACCCGCCTGTACTTCAACG
CACGCTCGAAGGGCTTTGTCCTTTCGGTTACGCCGCTGATCGGAGCCGACGAGCGTACCGGGGAAATCCTGGGACAGTTC
TTCTCGGAAGGACTGCCAGCAGGCGCCTGCCTTCAGGTACTCCACCTTGCAAGCCCGCGCATCAGCAGGATCATCGCCCC
GTGGTTCGCCCCACGATACATCCAGGGCGGCGTGTACGAGGCAATTGCCCGGCACCGGGCGCGGCGGCTCTATTCGCTCG
TATGGGAGTCCGGCTCGCCGGACGCGCCCTTCCATGCGCGGCATCACCAGGTGATCGTCTCGGTCGGGGTGCCGACCTCC
AAGTCGGTCAGCAATGAGGATCTCAAGCAGACCCGCGATGGCCTGGTGGCGATGCTCAAGTCGCTCAATCTCGGCGTGGT
CGAAGTCGGGCCGGAAGCGCTCATCGCTGTCATCGATGATCTGACTTCGCCCACCACCGCCCCGCAGGACGATGCGGTGC
CCTACAACCCGAATGATCCAATCGCATCCCAGGCGATCCGCCACGACATCGAACTGGTGGTGGCTGAAGACCGCATGCGG
CTCGTCACCGAGCGTTTCCGTCCCACTGGCAAGGTCAATGACGGCGTGCCCGAGATCGGGACCGTCTATCCCGATGCCTT
CGATGTCCGGCATTTTGCCGTACGCAACATGCCATCGCGCTGGGCCCCGTGGGAATGCGCGCGGCTGATCGGCGACCTGT
TCACCGACAAGCTGCGCTTCCCCTGCCCCGCCGCCACCATGCTGTGTCTCGTCTATCCGGACCAGGAGGCTGCATCGGCG
AAGGCCGGATTCAAGTTCATGCGGACGACCAGCCTCGCCGGGACCCGCAGCGCCCGGTTCCTGCCTCGGATCGGCGAACA
GGCCGCCGAGTGGCAGCATGTGCAGGCCGAGCTTCAGGAAGGCCGTCGGCTCGTGCGGGTCTTCTACGGCGTGACGGCCT
ATTCGCCGCTAGGCCAGGGCGACCGCCATGAACGGGCGATCAAATCGATCTACAAGGCGGCGGGCTGGGACCTTACCGAC
GAGCGCTATCTCCAGATCCAGGGTTTGCTCGCCGCGATGCCGCTCACCCTGGCTGACGGACTCGGCGCCGACATGGAGCG
GCTGAAGCGGTTCAAGACTGTGTTGTCGACGACCGCCGCCAATATCGCGCCCATGCAGGGCGAGTATCTCGGCAGCGCCC
ACCCCCACCTGCTGTTCATCGGGCGGCGCGGCCAGCCCTTCTTCTGGTCCCCGTTCGAGAACGAGGCCGGCAACCACAAT
GTCGCGATCTGCGGCAAGTCGGGATCGGGCAAGTCGGTGCTGCTCCAGGAGATGTGCGCCGCGCTGCGCGGTGCCGGCGC
ACAGGTGGTCGTGATCGACGATGGCCGCAGCTTCGAGCACTCGGTCAAGCTGCAGGGCGGCCGCTTTGTCGAGTTCACGA
TTGCAGCGGGCTTCTGTCTCAACCCGTTCTCGATGATCGATGCGACCCGTGCCACCGAAGACGAGGACTACCGCCTCGAC
TGCTTCGGGATGATCAAGGCCATCGTCGGGCAGATGGCTCGCCACAGCGCGAAGCTGACCGATACTGAGCGCGGATTGAT
CGACCGGGCGGTCAACCTTGTCTGGGCGCAGCACGGCACGGCAGCCACAGTTACGACCGTCGGCGAGATGCTGGCCAGTC
TCGGCCATGACACTGCCGCTGACATAGCAACCGCGCTCGCCCCCTACATGGCGGGCGGAACCTACGGCGCCTTCTTCGAA
GGCCAGGCAAGCCTCGACCTCGATGCGGACTTCACGGTCTTCGAGATGTCCGACCTTGCGAGCCGGGAGGATCTGCGCAG
CGTCGTCCTCTCAGCCATCATGTTCATGACCAGCCAAGCCATGACGCGAAGCCCAAGGTCGCTGCGCAAGCTTCTGCTGA
TCGATGAAGCCTGGTCGATGCTCAAGGGCGGTTCGATGGGTGAATTCGTCGAAACCTACGCCCGCACCTGCCGCAAGTAT
GGCGGCGCGCTGGCGACCGCTACCCAGTCGCTCAACGACTACTACAAGTCCGACGGGGCAACGGCGGCGCTCGAGAACAG
CGACTGGATGCTGATCCTCCAGCAGAAGCCGGAGACGATCGCCGATTTCAAGGCGAGCAAGCGCCTCGATATGGACGATC
GCACCGAGACGCTGATCCGCAGTCTCAAGCGCTCCGGGAGCGACTATTCCGAGGTGTTCATCAAGGGGCCGGAGACCGAG
GCGATCGGGCGGCTCGTGCTCGATGACTATTCGGCAACGCTCTTCTCGAGTTCGCCCCAAACCTTCGCCGCCATCGATGC
CGAGATCGCGCGCGGGCACCAGCTCGCCGATGCCATCGAGCGCATCGCTCATCCCAACCGCTGA

Upstream 100 bases:

>100_bases
GCGCAGCGGCGATTGAAGCCGCGAAAGCTGCAATCCGCCCGGCAGTCAGAACCGGCGAACAGCCGATCGTCAGCACCTCG
CAGCCCAAGGAGCCCAAGTG

Downstream 100 bases:

>100_bases
CACCCCATCACCAAAGGATCCCTATCTCCATGCCTCTCCACCTCGTCACCCCGTTCGACCGGACCGACCCGTCCGAAGAC
GAACAGCCCGTCAGCCCGCA

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 847; Mature: 846

Protein sequence:

>847_residues
MAEQLKTVVDRLLSGLLGDAEHADKARPQLMVDMLSDWLPYRVYDPATRLYFNARSKGFVLSVTPLIGADERTGEILGQF
FSEGLPAGACLQVLHLASPRISRIIAPWFAPRYIQGGVYEAIARHRARRLYSLVWESGSPDAPFHARHHQVIVSVGVPTS
KSVSNEDLKQTRDGLVAMLKSLNLGVVEVGPEALIAVIDDLTSPTTAPQDDAVPYNPNDPIASQAIRHDIELVVAEDRMR
LVTERFRPTGKVNDGVPEIGTVYPDAFDVRHFAVRNMPSRWAPWECARLIGDLFTDKLRFPCPAATMLCLVYPDQEAASA
KAGFKFMRTTSLAGTRSARFLPRIGEQAAEWQHVQAELQEGRRLVRVFYGVTAYSPLGQGDRHERAIKSIYKAAGWDLTD
ERYLQIQGLLAAMPLTLADGLGADMERLKRFKTVLSTTAANIAPMQGEYLGSAHPHLLFIGRRGQPFFWSPFENEAGNHN
VAICGKSGSGKSVLLQEMCAALRGAGAQVVVIDDGRSFEHSVKLQGGRFVEFTIAAGFCLNPFSMIDATRATEDEDYRLD
CFGMIKAIVGQMARHSAKLTDTERGLIDRAVNLVWAQHGTAATVTTVGEMLASLGHDTAADIATALAPYMAGGTYGAFFE
GQASLDLDADFTVFEMSDLASREDLRSVVLSAIMFMTSQAMTRSPRSLRKLLLIDEAWSMLKGGSMGEFVETYARTCRKY
GGALATATQSLNDYYKSDGATAALENSDWMLILQQKPETIADFKASKRLDMDDRTETLIRSLKRSGSDYSEVFIKGPETE
AIGRLVLDDYSATLFSSSPQTFAAIDAEIARGHQLADAIERIAHPNR

Sequences:

>Translated_847_residues
MAEQLKTVVDRLLSGLLGDAEHADKARPQLMVDMLSDWLPYRVYDPATRLYFNARSKGFVLSVTPLIGADERTGEILGQF
FSEGLPAGACLQVLHLASPRISRIIAPWFAPRYIQGGVYEAIARHRARRLYSLVWESGSPDAPFHARHHQVIVSVGVPTS
KSVSNEDLKQTRDGLVAMLKSLNLGVVEVGPEALIAVIDDLTSPTTAPQDDAVPYNPNDPIASQAIRHDIELVVAEDRMR
LVTERFRPTGKVNDGVPEIGTVYPDAFDVRHFAVRNMPSRWAPWECARLIGDLFTDKLRFPCPAATMLCLVYPDQEAASA
KAGFKFMRTTSLAGTRSARFLPRIGEQAAEWQHVQAELQEGRRLVRVFYGVTAYSPLGQGDRHERAIKSIYKAAGWDLTD
ERYLQIQGLLAAMPLTLADGLGADMERLKRFKTVLSTTAANIAPMQGEYLGSAHPHLLFIGRRGQPFFWSPFENEAGNHN
VAICGKSGSGKSVLLQEMCAALRGAGAQVVVIDDGRSFEHSVKLQGGRFVEFTIAAGFCLNPFSMIDATRATEDEDYRLD
CFGMIKAIVGQMARHSAKLTDTERGLIDRAVNLVWAQHGTAATVTTVGEMLASLGHDTAADIATALAPYMAGGTYGAFFE
GQASLDLDADFTVFEMSDLASREDLRSVVLSAIMFMTSQAMTRSPRSLRKLLLIDEAWSMLKGGSMGEFVETYARTCRKY
GGALATATQSLNDYYKSDGATAALENSDWMLILQQKPETIADFKASKRLDMDDRTETLIRSLKRSGSDYSEVFIKGPETE
AIGRLVLDDYSATLFSSSPQTFAAIDAEIARGHQLADAIERIAHPNR
>Mature_846_residues
AEQLKTVVDRLLSGLLGDAEHADKARPQLMVDMLSDWLPYRVYDPATRLYFNARSKGFVLSVTPLIGADERTGEILGQFF
SEGLPAGACLQVLHLASPRISRIIAPWFAPRYIQGGVYEAIARHRARRLYSLVWESGSPDAPFHARHHQVIVSVGVPTSK
SVSNEDLKQTRDGLVAMLKSLNLGVVEVGPEALIAVIDDLTSPTTAPQDDAVPYNPNDPIASQAIRHDIELVVAEDRMRL
VTERFRPTGKVNDGVPEIGTVYPDAFDVRHFAVRNMPSRWAPWECARLIGDLFTDKLRFPCPAATMLCLVYPDQEAASAK
AGFKFMRTTSLAGTRSARFLPRIGEQAAEWQHVQAELQEGRRLVRVFYGVTAYSPLGQGDRHERAIKSIYKAAGWDLTDE
RYLQIQGLLAAMPLTLADGLGADMERLKRFKTVLSTTAANIAPMQGEYLGSAHPHLLFIGRRGQPFFWSPFENEAGNHNV
AICGKSGSGKSVLLQEMCAALRGAGAQVVVIDDGRSFEHSVKLQGGRFVEFTIAAGFCLNPFSMIDATRATEDEDYRLDC
FGMIKAIVGQMARHSAKLTDTERGLIDRAVNLVWAQHGTAATVTTVGEMLASLGHDTAADIATALAPYMAGGTYGAFFEG
QASLDLDADFTVFEMSDLASREDLRSVVLSAIMFMTSQAMTRSPRSLRKLLLIDEAWSMLKGGSMGEFVETYARTCRKYG
GALATATQSLNDYYKSDGATAALENSDWMLILQQKPETIADFKASKRLDMDDRTETLIRSLKRSGSDYSEVFIKGPETEA
IGRLVLDDYSATLFSSSPQTFAAIDAEIARGHQLADAIERIAHPNR

Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002789
- InterPro:   IPR014117 [H]

Pfam domain/function: PF01935 DUF87 [H]

EC number: NA

Molecular weight: Translated: 93038; Mature: 92907

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQLKTVVDRLLSGLLGDAEHADKARPQLMVDMLSDWLPYRVYDPATRLYFNARSKGFV
CHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCEEEECCHHHEEEECCCCCEE
LSVTPLIGADERTGEILGQFFSEGLPAGACLQVLHLASPRISRIIAPWFAPRYIQGGVYE
EEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCHHHHCCHHHH
AIARHRARRLYSLVWESGSPDAPFHARHHQVIVSVGVPTSKSVSNEDLKQTRDGLVAMLK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
SLNLGVVEVGPEALIAVIDDLTSPTTAPQDDAVPYNPNDPIASQAIRHDIELVVAEDRMR
HCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEHHHHHH
LVTERFRPTGKVNDGVPEIGTVYPDAFDVRHFAVRNMPSRWAPWECARLIGDLFTDKLRF
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC
PCPAATMLCLVYPDQEAASAKAGFKFMRTTSLAGTRSARFLPRIGEQAAEWQHVQAELQE
CCCHHHEEEEECCCCHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GRRLVRVFYGVTAYSPLGQGDRHERAIKSIYKAAGWDLTDERYLQIQGLLAAMPLTLADG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
LGADMERLKRFKTVLSTTAANIAPMQGEYLGSAHPHLLFIGRRGQPFFWSPFENEAGNHN
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
VAICGKSGSGKSVLLQEMCAALRGAGAQVVVIDDGRSFEHSVKLQGGRFVEFTIAAGFCL
EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCEEEEEEEECCCCC
NPFSMIDATRATEDEDYRLDCFGMIKAIVGQMARHSAKLTDTERGLIDRAVNLVWAQHGT
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
AATVTTVGEMLASLGHDTAADIATALAPYMAGGTYGAFFEGQASLDLDADFTVFEMSDLA
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEHHHHC
SREDLRSVVLSAIMFMTSQAMTRSPRSLRKLLLIDEAWSMLKGGSMGEFVETYARTCRKY
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
GGALATATQSLNDYYKSDGATAALENSDWMLILQQKPETIADFKASKRLDMDDRTETLIR
CCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHH
SLKRSGSDYSEVFIKGPETEAIGRLVLDDYSATLFSSSPQTFAAIDAEIARGHQLADAIE
HHHHCCCCCHHEEEECCCHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHCCHHHHHHHH
RIAHPNR
HHCCCCC
>Mature Secondary Structure 
AEQLKTVVDRLLSGLLGDAEHADKARPQLMVDMLSDWLPYRVYDPATRLYFNARSKGFV
HHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCEEEECCHHHEEEECCCCCEE
LSVTPLIGADERTGEILGQFFSEGLPAGACLQVLHLASPRISRIIAPWFAPRYIQGGVYE
EEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCHHHHCCHHHH
AIARHRARRLYSLVWESGSPDAPFHARHHQVIVSVGVPTSKSVSNEDLKQTRDGLVAMLK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
SLNLGVVEVGPEALIAVIDDLTSPTTAPQDDAVPYNPNDPIASQAIRHDIELVVAEDRMR
HCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEHHHHHH
LVTERFRPTGKVNDGVPEIGTVYPDAFDVRHFAVRNMPSRWAPWECARLIGDLFTDKLRF
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC
PCPAATMLCLVYPDQEAASAKAGFKFMRTTSLAGTRSARFLPRIGEQAAEWQHVQAELQE
CCCHHHEEEEECCCCHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GRRLVRVFYGVTAYSPLGQGDRHERAIKSIYKAAGWDLTDERYLQIQGLLAAMPLTLADG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
LGADMERLKRFKTVLSTTAANIAPMQGEYLGSAHPHLLFIGRRGQPFFWSPFENEAGNHN
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
VAICGKSGSGKSVLLQEMCAALRGAGAQVVVIDDGRSFEHSVKLQGGRFVEFTIAAGFCL
EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCEEEEEEEECCCCC
NPFSMIDATRATEDEDYRLDCFGMIKAIVGQMARHSAKLTDTERGLIDRAVNLVWAQHGT
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
AATVTTVGEMLASLGHDTAADIATALAPYMAGGTYGAFFEGQASLDLDADFTVFEMSDLA
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEHHHHC
SREDLRSVVLSAIMFMTSQAMTRSPRSLRKLLLIDEAWSMLKGGSMGEFVETYARTCRKY
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
GGALATATQSLNDYYKSDGATAALENSDWMLILQQKPETIADFKASKRLDMDDRTETLIR
CCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHH
SLKRSGSDYSEVFIKGPETEAIGRLVLDDYSATLFSSSPQTFAAIDAEIARGHQLADAIE
HHHHCCCCCHHEEEECCCHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHCCHHHHHHHH
RIAHPNR
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2265751; 7915817; 1355084 [H]