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The map label for this gene is ybdA [C]

Identifier: 87200118

GI number: 87200118

Start: 2238258

End: 2239541

Strand: Direct

Name: ybdA [C]

Synonym: Saro_2102

Alternate gene names: 87200118

Gene position: 2238258-2239541 (Clockwise)

Preceding gene: 87200117

Following gene: 87200119

Centisome position: 62.84

GC content: 67.29

Gene sequence:

>1284_bases
GTGACCACTTCCGCGCCAGTTCCAGCCTCGCCCCTCGCCATTCCGGACTACCGCCGCTTCTGGATCGCGCGGTTCTTCTC
GGTCGTGGCGACTTCGGGCATGGTCGTCATTCTCGGCTACCAGCTCTATGACGTGGCGCGCGGGCAGTACGGCATGTCCA
TCGCGCAGGCCGCTTTCCAGCTCGGCCTGCTGGGCCTCGCGCAGTTCCTGCCGCTGTTCCTGCTGACACCGATCGCGGGC
GTCATCGCGGACCGGTTCGACCGGCGCAACGTCGCGGGCCTTTCGATCTGCCTCGACCTTACCATCGCCCTGACGCTGGC
GATCTGCACGGCGAACGGGGTGCTGTCGCTCCCGCTGCTGTTCGGCCTTGCCGCACTTCACGGCACCGCGCGAGTGTTCA
TCGGCCCCGCGCTCGCCTCCATTGCGCCAAACATCGTACCCGCCGAACTCATGCCAAAGGCCGTCGCGATCAATTCGATG
GCGTGGCAGACCGGATCGGTCGGCGGCCCGGCAATAGCGGGACTGCTCTTTGCGGGGCACCCGGCACTGCCCTACTGGAC
GTCGACCGCGTTGCTCGCGCTGTCGGCGGTCTGCGCCTTCGGCATCCGCCGCCTGCCCCCGCCGCCCGGCAACCGCGACG
TCCACCCGATCCGCCAGATCCGTGAAGGGCTGTCGTTCGTGTGGAACGACCGCTTCCTGCTGGGCTGCGTCACGCTCGAC
CTGTTCGCGGTGCTGCTGGGGGGCGCGACCGCGCTGCTGCCGGTCTTCGCCCGCGACATCCTGTTCATCGACGGACACCC
GGTGGGCGCGGACGGCCTTGGCATAATGCGCGCCATGCCGGGCCTTGGCGCGGCGCTTGTCGCGTTCGTCCTCTCGCGCA
GGCCCATCGCCACCAACGTCGGCAACAAGATGCTGCTGGGCGTCGTAATCTACGGCCTGTTCACCATCGGCTTCGGCCTT
TCGTCGAACTTTTACCTGTCGCTCGTCATGCTCATGGGGCTTGGCGCGGGCGACATGGTCTCGGTCTTCATCCGCAACAC
GCTGGTCCAGTTGCACACCCCCGACGAAGTGCGCGGGCGGGTCTCGTCGATCTCGGGCCTCGCCATTTCGGCGTCGAACG
AGCTGGGCGAGATGCAATCTGGCGTGGCCGCCGCGCTTCTGGGCGCCGTGGGCGCGGTCGTGTTCGGCGGGGTCAGCGCC
GTCGCCGTGACGGCAGCATGGTTTTTCCTTTTCCCGGAACTGAAGAACGCGCGAACCTTTGCAGCGCGATACAGATCGGC
CTAA

Upstream 100 bases:

>100_bases
GCCAAGTCTTGCGGCCCAGGTCTTCTGAACCAAGTCTTCTCCGGCCACCGCAAATTTTGCTTTCTTGGCAAGCGCCCGCG
CGGCTGGCATTGCGCGAGAC

Downstream 100 bases:

>100_bases
ACTCTCCAAACTCACCACAAGGAGCAAGCGACATGAGAGCGGAATCCATCCTCGCCACGATCGGCAACACCCCGCACATT
CGCCTGTCCCGCCTGTTTCC

Product: major facilitator transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; DrugProton Antiporter; Facilitator Superfamily Transporter; MFS Permease; Permease Of Facilitator Superfamily; Membrane Transporter; Transporter Facilitator Family; Transmembrane Protein; Siderophore Export Protein; Facilitator Superfamily Transporter Permease; MFS Family Transporter; Permease; Facilitator Superfamily; Facilitator MFS1 Protein; Permease Facilitator Superfamily; Macrolide-Efflux Protein; Integral Membrane Protein; Permease Protein; Permeases Of Facilitator Superfamily; Mfs Transporter; Permease MDR ; Facilitator Superfamily Transmembrane Transporter; Arabinose Efflux Permease; Integral Membrane Efflux Protein; Drug Proton Antiporter; Integral Membrane Protein MFS Transporter; Membrame Protein; DrugH+ Antiporter; Facilitator Family Transporter; Facilitator Superfamily Multidrug Resistance Protein; Drug Resistance Efflux Protein; Facilitator Superfamily Transporter Transporter

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MTTSAPVPASPLAIPDYRRFWIARFFSVVATSGMVVILGYQLYDVARGQYGMSIAQAAFQLGLLGLAQFLPLFLLTPIAG
VIADRFDRRNVAGLSICLDLTIALTLAICTANGVLSLPLLFGLAALHGTARVFIGPALASIAPNIVPAELMPKAVAINSM
AWQTGSVGGPAIAGLLFAGHPALPYWTSTALLALSAVCAFGIRRLPPPPGNRDVHPIRQIREGLSFVWNDRFLLGCVTLD
LFAVLLGGATALLPVFARDILFIDGHPVGADGLGIMRAMPGLGAALVAFVLSRRPIATNVGNKMLLGVVIYGLFTIGFGL
SSNFYLSLVMLMGLGAGDMVSVFIRNTLVQLHTPDEVRGRVSSISGLAISASNELGEMQSGVAAALLGAVGAVVFGGVSA
VAVTAAWFFLFPELKNARTFAARYRSA

Sequences:

>Translated_427_residues
MTTSAPVPASPLAIPDYRRFWIARFFSVVATSGMVVILGYQLYDVARGQYGMSIAQAAFQLGLLGLAQFLPLFLLTPIAG
VIADRFDRRNVAGLSICLDLTIALTLAICTANGVLSLPLLFGLAALHGTARVFIGPALASIAPNIVPAELMPKAVAINSM
AWQTGSVGGPAIAGLLFAGHPALPYWTSTALLALSAVCAFGIRRLPPPPGNRDVHPIRQIREGLSFVWNDRFLLGCVTLD
LFAVLLGGATALLPVFARDILFIDGHPVGADGLGIMRAMPGLGAALVAFVLSRRPIATNVGNKMLLGVVIYGLFTIGFGL
SSNFYLSLVMLMGLGAGDMVSVFIRNTLVQLHTPDEVRGRVSSISGLAISASNELGEMQSGVAAALLGAVGAVVFGGVSA
VAVTAAWFFLFPELKNARTFAARYRSA
>Mature_426_residues
TTSAPVPASPLAIPDYRRFWIARFFSVVATSGMVVILGYQLYDVARGQYGMSIAQAAFQLGLLGLAQFLPLFLLTPIAGV
IADRFDRRNVAGLSICLDLTIALTLAICTANGVLSLPLLFGLAALHGTARVFIGPALASIAPNIVPAELMPKAVAINSMA
WQTGSVGGPAIAGLLFAGHPALPYWTSTALLALSAVCAFGIRRLPPPPGNRDVHPIRQIREGLSFVWNDRFLLGCVTLDL
FAVLLGGATALLPVFARDILFIDGHPVGADGLGIMRAMPGLGAALVAFVLSRRPIATNVGNKMLLGVVIYGLFTIGFGLS
SNFYLSLVMLMGLGAGDMVSVFIRNTLVQLHTPDEVRGRVSSISGLAISASNELGEMQSGVAAALLGAVGAVVFGGVSAV
AVTAAWFFLFPELKNARTFAARYRSA

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44737; Mature: 44606

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSAPVPASPLAIPDYRRFWIARFFSVVATSGMVVILGYQLYDVARGQYGMSIAQAAFQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCHHHHHHHHH
LGLLGLAQFLPLFLLTPIAGVIADRFDRRNVAGLSICLDLTIALTLAICTANGVLSLPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FGLAALHGTARVFIGPALASIAPNIVPAELMPKAVAINSMAWQTGSVGGPAIAGLLFAGH
HHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCCHHHHHCCHHCCCCCCCCHHHHHHHHCCC
PALPYWTSTALLALSAVCAFGIRRLPPPPGNRDVHPIRQIREGLSFVWNDRFLLGCVTLD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
LFAVLLGGATALLPVFARDILFIDGHPVGADGLGIMRAMPGLGAALVAFVLSRRPIATNV
HHHHHHCCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCC
GNKMLLGVVIYGLFTIGFGLSSNFYLSLVMLMGLGAGDMVSVFIRNTLVQLHTPDEVRGR
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCHHHHHH
VSSISGLAISASNELGEMQSGVAAALLGAVGAVVFGGVSAVAVTAAWFFLFPELKNARTF
HHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
AARYRSA
HHHHCCC
>Mature Secondary Structure 
TTSAPVPASPLAIPDYRRFWIARFFSVVATSGMVVILGYQLYDVARGQYGMSIAQAAFQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCHHHHHHHHH
LGLLGLAQFLPLFLLTPIAGVIADRFDRRNVAGLSICLDLTIALTLAICTANGVLSLPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FGLAALHGTARVFIGPALASIAPNIVPAELMPKAVAINSMAWQTGSVGGPAIAGLLFAGH
HHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCCHHHHHCCHHCCCCCCCCHHHHHHHHCCC
PALPYWTSTALLALSAVCAFGIRRLPPPPGNRDVHPIRQIREGLSFVWNDRFLLGCVTLD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
LFAVLLGGATALLPVFARDILFIDGHPVGADGLGIMRAMPGLGAALVAFVLSRRPIATNV
HHHHHHCCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCC
GNKMLLGVVIYGLFTIGFGLSSNFYLSLVMLMGLGAGDMVSVFIRNTLVQLHTPDEVRGR
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCHHHHHH
VSSISGLAISASNELGEMQSGVAAALLGAVGAVVFGGVSAVAVTAAWFFLFPELKNARTF
HHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
AARYRSA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA