| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is paaF [C]
Identifier: 87200110
GI number: 87200110
Start: 2230227
End: 2231000
Strand: Direct
Name: paaF [C]
Synonym: Saro_2094
Alternate gene names: 87200110
Gene position: 2230227-2231000 (Clockwise)
Preceding gene: 87200109
Following gene: 87200111
Centisome position: 62.62
GC content: 69.9
Gene sequence:
>774_bases ATGACAGACCTGGTCCTGAAGACGCGGCACGAAAACGGCCGCATCGACCTCACTCTCAATCGCCCGGACAAGTTCAACGC CCTGTCCGAAGCGCTCCTCGCCGCGCTCGGGTCGGAACTCGCCCGGATCGCCGCAGACCCCGGCGCCCGCGTCGTGGTCC TCTCCGGCGCCGGCAAGGCGTTCTGCGCCGGCCACGATCTCGCAGAGATGCAGGCGGACCGCCGCCTTGATGCCTACCGC CGCCTCTTCTCCGCCTGCACCGAAGTCATGGAGGCGATCGCCGCCCTGCCCGTGCCGGTCATCGCCCGCATCCACGGCGT CGCCACGGCCGCCGGTTGCCAGCTCGTCGGCGCCTGCGACCTTGCCGTCGCGTCGGAAACCGCGCGCTTTGCCGTCTCGG GCATCAACGTCGGCCTGTTCTGCTCGACCCCCGCCGTAGAGCTGAGCCGCAACGTGCCCGCCAAGCGCGCGTTCGAAATG CTGGTGACCGGCAAGTTCATCGGCGCCCGCACCGCATCCGACTGGGGCCTCGTCAACACCGTGGCCGCTCCCGAAGCGCT GGACTCCGCCGTCGACGACCTCGCCGCCACGATCCTCGCCAAGAGCCCCGACGCCATCCGCCGGGGCAAGGCCCTCTTCC ACGCCCAGCGCGAACGCCCCCGCGCCGAGGCCTATGCCCTCGCCTGCGAAGTCATGGCGCAGAACATGATGGACGAGAAC ACCGACGAAGGCATCACCGCCTTCCTCGAAAAGCGCCCGCCCGTCTGGCGCTGA
Upstream 100 bases:
>100_bases TGACCGCCGGAGGGTGAGCGACCATGCCGCTCACGCCCGTCACCCTCCGAACGCGGTTCACGCCCAGGCACGGAAAGCCG AAGCACCAAAGGAGAGGCGA
Downstream 100 bases:
>100_bases AGGCCCGGAAGCCGCGCCGCCCCCGAAACGGTCCCCGCCCCCGCATCCGGGGCGCCCCCGCCAAACCGCCAACGCCCTGC CCGTCACCCCGGGCCCGCCC
Product: enoyl-CoA hydratase
Products: NA
Alternate protein names: 3-hydroxypropionyl-CoA dehydratase [H]
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MTDLVLKTRHENGRIDLTLNRPDKFNALSEALLAALGSELARIAADPGARVVVLSGAGKAFCAGHDLAEMQADRRLDAYR RLFSACTEVMEAIAALPVPVIARIHGVATAAGCQLVGACDLAVASETARFAVSGINVGLFCSTPAVELSRNVPAKRAFEM LVTGKFIGARTASDWGLVNTVAAPEALDSAVDDLAATILAKSPDAIRRGKALFHAQRERPRAEAYALACEVMAQNMMDEN TDEGITAFLEKRPPVWR
Sequences:
>Translated_257_residues MTDLVLKTRHENGRIDLTLNRPDKFNALSEALLAALGSELARIAADPGARVVVLSGAGKAFCAGHDLAEMQADRRLDAYR RLFSACTEVMEAIAALPVPVIARIHGVATAAGCQLVGACDLAVASETARFAVSGINVGLFCSTPAVELSRNVPAKRAFEM LVTGKFIGARTASDWGLVNTVAAPEALDSAVDDLAATILAKSPDAIRRGKALFHAQRERPRAEAYALACEVMAQNMMDEN TDEGITAFLEKRPPVWR >Mature_256_residues TDLVLKTRHENGRIDLTLNRPDKFNALSEALLAALGSELARIAADPGARVVVLSGAGKAFCAGHDLAEMQADRRLDAYRR LFSACTEVMEAIAALPVPVIARIHGVATAAGCQLVGACDLAVASETARFAVSGINVGLFCSTPAVELSRNVPAKRAFEML VTGKFIGARTASDWGLVNTVAAPEALDSAVDDLAATILAKSPDAIRRGKALFHAQRERPRAEAYALACEVMAQNMMDENT DEGITAFLEKRPPVWR
Specific function: Plays a role in autotrophic carbon fixation via the 3- hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl- CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crot
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI31542718, Length=248, Percent_Identity=42.741935483871, Blast_Score=196, Evalue=1e-50, Organism=Homo sapiens, GI194097323, Length=251, Percent_Identity=31.8725099601594, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI70995211, Length=223, Percent_Identity=31.8385650224215, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI4502327, Length=266, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI37594469, Length=218, Percent_Identity=25.6880733944954, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI37594471, Length=218, Percent_Identity=25.6880733944954, Blast_Score=68, Evalue=9e-12, Organism=Escherichia coli, GI1787659, Length=258, Percent_Identity=32.5581395348837, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI221142681, Length=267, Percent_Identity=32.9588014981273, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1788597, Length=252, Percent_Identity=30.5555555555556, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787660, Length=269, Percent_Identity=29.368029739777, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082183, Length=250, Percent_Identity=27.2, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790281, Length=183, Percent_Identity=27.3224043715847, Blast_Score=66, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17540306, Length=242, Percent_Identity=37.603305785124, Blast_Score=159, Evalue=1e-39, Organism=Caenorhabditis elegans, GI25145438, Length=241, Percent_Identity=29.045643153527, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17554946, Length=241, Percent_Identity=27.3858921161826, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17536985, Length=220, Percent_Identity=29.0909090909091, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17560910, Length=212, Percent_Identity=31.6037735849057, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17534483, Length=250, Percent_Identity=28, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17540714, Length=205, Percent_Identity=29.2682926829268, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17535521, Length=256, Percent_Identity=25, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI25141363, Length=175, Percent_Identity=26.8571428571429, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17549921, Length=185, Percent_Identity=28.1081081081081, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI19922422, Length=256, Percent_Identity=38.28125, Blast_Score=182, Evalue=1e-46, Organism=Drosophila melanogaster, GI20129971, Length=239, Percent_Identity=30.9623430962343, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI24653477, Length=239, Percent_Identity=30.9623430962343, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI24653139, Length=247, Percent_Identity=29.5546558704453, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI21357171, Length=207, Percent_Identity=30.9178743961353, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI19920382, Length=219, Percent_Identity=28.7671232876712, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24650670, Length=191, Percent_Identity=32.4607329842932, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.116 [H]
Molecular weight: Translated: 27372; Mature: 27241
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLVLKTRHENGRIDLTLNRPDKFNALSEALLAALGSELARIAADPGARVVVLSGAGKA CCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCE FCAGHDLAEMQADRRLDAYRRLFSACTEVMEAIAALPVPVIARIHGVATAAGCQLVGACD EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEHHH LAVASETARFAVSGINVGLFCSTPAVELSRNVPAKRAFEMLVTGKFIGARTASDWGLVNT HHHHHHHHHEEEECCCEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH VAAPEALDSAVDDLAATILAKSPDAIRRGKALFHAQRERPRAEAYALACEVMAQNMMDEN HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC TDEGITAFLEKRPPVWR CCHHHHHHHHCCCCCCC >Mature Secondary Structure TDLVLKTRHENGRIDLTLNRPDKFNALSEALLAALGSELARIAADPGARVVVLSGAGKA CCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCE FCAGHDLAEMQADRRLDAYRRLFSACTEVMEAIAALPVPVIARIHGVATAAGCQLVGACD EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEHHH LAVASETARFAVSGINVGLFCSTPAVELSRNVPAKRAFEMLVTGKFIGARTASDWGLVNT HHHHHHHHHEEEECCCEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH VAAPEALDSAVDDLAATILAKSPDAIRRGKALFHAQRERPRAEAYALACEVMAQNMMDEN HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC TDEGITAFLEKRPPVWR CCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA