| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is divJ [H]
Identifier: 87200050
GI number: 87200050
Start: 2169049
End: 2170425
Strand: Reverse
Name: divJ [H]
Synonym: Saro_2034
Alternate gene names: 87200050
Gene position: 2170425-2169049 (Counterclockwise)
Preceding gene: 87200051
Following gene: 87200046
Centisome position: 60.94
GC content: 68.7
Gene sequence:
>1377_bases ATGACCGCCGCTGGGCCAATCCGCGCCCGTCTTGACGGCGCCGACTGCCTGGTCGAGGCGGACGAGACGCTTGCGGCCCT GCAACTGCGGGTCGGCGGTTCCTATCCCGGACCGCTTGCCATTCCCGGGCTGCTTGCGCTGGCCCGGCGGGCCCGCGTCC AGCAGGTTCCGCTGGATGGCCTCGTCACCGTCGCGGACGAAGCCCAGCCCGTGTCCTTTCGCGCGCGGGTCGACCCGGCG GATGGGGGCACGCTGATCAGGATTACCGAGTGGCAGCTTTCCGCCGATGCATGGGCCGCCGAGGAACGCGCCACGGACGA GCTTCTGCTTCGCCAGGTAGCGGAAGCTCACGTCGTTCTCGATGCGGAACAGCGCGTCATTTCGGGTATGACCGAGGCTG CCGATCTGGAGCAGTTCGGCCAATCCCTGCGGACGGGCTTCGGCCGGTACTGGACCGACCTCGTCGAACTGCCCGGCAAT ACCTACCGCCAGCCTCTGCACTGGCGTCTCCTCGATGATGCCGAACTCGAGATACCGGGCTCGTCCAGAGTCTGGCGCGC GCGCCTGATCCCGCTGCGGGCGGGTGGCTTCGAACTCCTGCTGCTGGCGGACACAGTGCTTGCCAGGCCCACGAAAGCGC AGACGGCGCCCGGTGCCGCCACTTCGCGCGGGACCGACTGGAAGGGCTTGCTTGGCCGAACCCTGGCACCGGCCTTGCGT CTGCCGATGAACCGCATCGTCGCCAATGCCGAGACGATCCGTTCTCGCCTGGCCGGCCCGCTCGATGCCCAATACGTCGC ATATGCCGGCGACATTGCCGAGGCCGGTCGCCATCTCCTCGGTCTGGTCGAAGACCTTGCCGATCTGGAAACGGTCGAGG ACGAGGATTTCGCTCCGGTCCCGGACCACGTGGACCTTGCCGACTGCGCCCGCCGCGCCGCCGGCATACTCGGGGTCCGC GCCCAGGAGCGGGGCATCGTCATGGTGCCGCCGTCGATCGAGGCGACCGCGCCCGCGATCGGCGAATTCCGCCGCGTCCT CCAGATTCTCCTCAACCTGATCGGCAACGCGATCCGCTACGCGCCAGAGCATTCGGCCGTCTCGATCGAGACCGGCGTCG AGGCGGGCGGGACATGGGTGGCGGTGTCGGACGAGGGGCGGGGAATCGCGCTCGAGGAGGCCGACAAGGTCTTCGAGAAG TTCGAGCGGCTCGGTCGCAGCGGCGATGGCGGCAGCGGTCTCGGCCTCTACATCTCGCGCAAGCTCGCGCGGGCGATGGG GGGGGAACTCTCGGTCGAGCAGGCCAAAGGCGGCGGCGCGCGTTTCGTTCTCAGCCTGCCTTCGGATGCAGAGGCGCTTT CGAGCGCCATCGGCTAA
Upstream 100 bases:
>100_bases ATTCATCCCGATGTTTCGCTTCCGTCCGATGTCGACTCCGTGCACCCCGATCGCGCAGCCGCGCTTCTTTCGGCGTCGCG GATCGGGGCGAGGGGCTGAC
Downstream 100 bases:
>100_bases GGTTCAGCGGCGGCTGCGCCAGAGCGCGCCCAGTCCCAGCAGCATGAGCCCGGCGCCGATCAGCGCCCACTGGCCCTGTG CGAGCATGAAGCTCGATGCG
Product: histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MTAAGPIRARLDGADCLVEADETLAALQLRVGGSYPGPLAIPGLLALARRARVQQVPLDGLVTVADEAQPVSFRARVDPA DGGTLIRITEWQLSADAWAAEERATDELLLRQVAEAHVVLDAEQRVISGMTEAADLEQFGQSLRTGFGRYWTDLVELPGN TYRQPLHWRLLDDAELEIPGSSRVWRARLIPLRAGGFELLLLADTVLARPTKAQTAPGAATSRGTDWKGLLGRTLAPALR LPMNRIVANAETIRSRLAGPLDAQYVAYAGDIAEAGRHLLGLVEDLADLETVEDEDFAPVPDHVDLADCARRAAGILGVR AQERGIVMVPPSIEATAPAIGEFRRVLQILLNLIGNAIRYAPEHSAVSIETGVEAGGTWVAVSDEGRGIALEEADKVFEK FERLGRSGDGGSGLGLYISRKLARAMGGELSVEQAKGGGARFVLSLPSDAEALSSAIG
Sequences:
>Translated_458_residues MTAAGPIRARLDGADCLVEADETLAALQLRVGGSYPGPLAIPGLLALARRARVQQVPLDGLVTVADEAQPVSFRARVDPA DGGTLIRITEWQLSADAWAAEERATDELLLRQVAEAHVVLDAEQRVISGMTEAADLEQFGQSLRTGFGRYWTDLVELPGN TYRQPLHWRLLDDAELEIPGSSRVWRARLIPLRAGGFELLLLADTVLARPTKAQTAPGAATSRGTDWKGLLGRTLAPALR LPMNRIVANAETIRSRLAGPLDAQYVAYAGDIAEAGRHLLGLVEDLADLETVEDEDFAPVPDHVDLADCARRAAGILGVR AQERGIVMVPPSIEATAPAIGEFRRVLQILLNLIGNAIRYAPEHSAVSIETGVEAGGTWVAVSDEGRGIALEEADKVFEK FERLGRSGDGGSGLGLYISRKLARAMGGELSVEQAKGGGARFVLSLPSDAEALSSAIG >Mature_457_residues TAAGPIRARLDGADCLVEADETLAALQLRVGGSYPGPLAIPGLLALARRARVQQVPLDGLVTVADEAQPVSFRARVDPAD GGTLIRITEWQLSADAWAAEERATDELLLRQVAEAHVVLDAEQRVISGMTEAADLEQFGQSLRTGFGRYWTDLVELPGNT YRQPLHWRLLDDAELEIPGSSRVWRARLIPLRAGGFELLLLADTVLARPTKAQTAPGAATSRGTDWKGLLGRTLAPALRL PMNRIVANAETIRSRLAGPLDAQYVAYAGDIAEAGRHLLGLVEDLADLETVEDEDFAPVPDHVDLADCARRAAGILGVRA QERGIVMVPPSIEATAPAIGEFRRVLQILLNLIGNAIRYAPEHSAVSIETGVEAGGTWVAVSDEGRGIALEEADKVFEKF ERLGRSGDGGSGLGLYISRKLARAMGGELSVEQAKGGGARFVLSLPSDAEALSSAIG
Specific function: Kinase required for the regulation of cell division and differentiation. Makes part of a signal transduction pathway, activating pleD by phosphorylation [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI48994928, Length=246, Percent_Identity=28.4552845528455, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1788713, Length=239, Percent_Identity=27.1966527196653, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1787894, Length=109, Percent_Identity=40.3669724770642, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI87081816, Length=189, Percent_Identity=32.8042328042328, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI87082128, Length=219, Percent_Identity=26.4840182648402, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI145693157, Length=250, Percent_Identity=26.8, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1790861, Length=209, Percent_Identity=29.1866028708134, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1790436, Length=105, Percent_Identity=32.3809523809524, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1789149, Length=223, Percent_Identity=25.5605381165919, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788393, Length=181, Percent_Identity=29.2817679558011, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786783, Length=218, Percent_Identity=24.7706422018349, Blast_Score=62, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 48784; Mature: 48653
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAAGPIRARLDGADCLVEADETLAALQLRVGGSYPGPLAIPGLLALARRARVQQVPLDG CCCCCCCEEEECCCHHEEECCHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC LVTVADEAQPVSFRARVDPADGGTLIRITEWQLSADAWAAEERATDELLLRQVAEAHVVL EEEECCCCCCCEEEEEECCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEE DAEQRVISGMTEAADLEQFGQSLRTGFGRYWTDLVELPGNTYRQPLHWRLLDDAELEIPG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEECCC SSRVWRARLIPLRAGGFELLLLADTVLARPTKAQTAPGAATSRGTDWKGLLGRTLAPALR CCCEEEEEEEEEECCCEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LPMNRIVANAETIRSRLAGPLDAQYVAYAGDIAEAGRHLLGLVEDLADLETVEDEDFAPV CCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PDHVDLADCARRAAGILGVRAQERGIVMVPPSIEATAPAIGEFRRVLQILLNLIGNAIRY CCCCCHHHHHHHHHHHEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC APEHSAVSIETGVEAGGTWVAVSDEGRGIALEEADKVFEKFERLGRSGDGGSGLGLYISR CCCCCEEEEECCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH KLARAMGGELSVEQAKGGGARFVLSLPSDAEALSSAIG HHHHHHCCCCEEEECCCCCEEEEEECCCCHHHHHHHCC >Mature Secondary Structure TAAGPIRARLDGADCLVEADETLAALQLRVGGSYPGPLAIPGLLALARRARVQQVPLDG CCCCCCEEEECCCHHEEECCHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC LVTVADEAQPVSFRARVDPADGGTLIRITEWQLSADAWAAEERATDELLLRQVAEAHVVL EEEECCCCCCCEEEEEECCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEE DAEQRVISGMTEAADLEQFGQSLRTGFGRYWTDLVELPGNTYRQPLHWRLLDDAELEIPG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEECCC SSRVWRARLIPLRAGGFELLLLADTVLARPTKAQTAPGAATSRGTDWKGLLGRTLAPALR CCCEEEEEEEEEECCCEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LPMNRIVANAETIRSRLAGPLDAQYVAYAGDIAEAGRHLLGLVEDLADLETVEDEDFAPV CCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PDHVDLADCARRAAGILGVRAQERGIVMVPPSIEATAPAIGEFRRVLQILLNLIGNAIRY CCCCCHHHHHHHHHHHEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC APEHSAVSIETGVEAGGTWVAVSDEGRGIALEEADKVFEKFERLGRSGDGGSGLGLYISR CCCCCEEEEECCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH KLARAMGGELSVEQAKGGGARFVLSLPSDAEALSSAIG HHHHHHCCCCEEEECCCCCEEEEEECCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1438215; 11259647 [H]