Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 87200000

GI number: 87200000

Start: 2103173

End: 2104465

Strand: Reverse

Name: yciR [C]

Synonym: Saro_1983

Alternate gene names: 87200000

Gene position: 2104465-2103173 (Counterclockwise)

Preceding gene: 87200004

Following gene: 87199996

Centisome position: 59.09

GC content: 65.82

Gene sequence:

>1293_bases
ATGGACAGCGCCATCCCGCCAGACGCGATCGACGACGAATCCCGCGACACTTTGACGGGCCTTGCAGGCATCGCCTCCGC
GAGCGACTGGCTGGATCGGAACGGGGCCAAAGGCTTCGTTCACGCCATGCTGTTGGGCCTGCACCGGTTCCGGTCGGTGA
ACCTGGCTTACGGGCAGTCGGCGGGAGACATCGCGCTGGTCGAGCTGGCCCAACGCATTCGGATCTTTGCCGACGAGGAG
ATTGGTGGCGATACTTTGGTCGCGCGCGTCGGTGGCGGCGATTTCCTTGTTGCAAGCGCCGGCAAGGTCAGCCGGGAGCG
GTGGCAGTGGCTTGCCGAAGCCCTGGCGCGGCGCGTGTCGCGAGTGCTGCCGCTTCGGGGAGAGGAGCTACAACTGGCGC
CTCGCATTGCGCTGCTCCGAGGGCAGCCCGGGGAGGGTGGCCCGGCGTTGCTCGATCGGCTGGACCAGGCGCTTACGACC
CTTCAGCAGCAGCCGGCGCGCCGCCTTCAGTGGGCCGATGGGTCGCATCTTGCGCGGGGGAGGAGCGCCGCGCGACTGGA
AGCCGACATGATCGGGGCAATGGCAAGGGACGAAATCGGCATCGTCTTCCAGCCGCAGTACGCGGTGGCCGGAGGGGATA
TCGTGGGGGTGGAGGCGCTGGCCCGTTGGGATCATCCGCAGCTGGGAAGGATAGGCGCCGAAACGCTGTTCGCCTTGGCC
GAGCGTGGAGACCACGTGGCGCAGGTTTCGCGGCACATTGCCGGTCGCGCGATGTGGCAGGCCGTAGAATGGAAACCCGT
TATTCCACTTTCACTGAACATCACGGCTGAGGATCTCGGGGACGACCGCCTTGTCGAGGATTGCCGCTTGCTGCTGGCAC
AGACGGGTTATCCTCCTTCGAGCCTGACTGTCGAGGTTACCGAACATGCCCTGATCGCCGACTTCGAACGTTCCGCCGCC
GCACTCGAGCAGCTTGCCCGGCTAGGCGTGAGGATCGCGCTCGACGATTTCGGCGCCGGCTATGCCAACTTCCGTACGCT
CAAGGCCCTCCCGGTGAACACCTTGAAGCTCGACGCATCCCTGGTCAGGGACATCGACCGCGACCCGCGCGACCGGGCGA
TCCTGCGGGCCATCGTGGCAATGGCGCGTGCGCTGGGCCAGAAGGTTGTCGTCGAGGGTATCGAACGGGAAAGCCAGCTA
CAGGTGCTTGCAGCGGAAGGATGTGACGCCTTCCAGGGGTTCTTGCGGTCAGGCCCGATCCCCGCCGATCAGATTGCCGC
ACTCTCCCGCTAG

Upstream 100 bases:

>100_bases
TGGAGCGCCACGCCATGACGCAATGCACAAAAGCACAACTGGCGAGAGCCGGACGCATTAGCGGAACGCTTTGGCAAGTT
TCGGATGGTATCGCGCAGGC

Downstream 100 bases:

>100_bases
GCCGCTTTCCTGGCACGACGGGCGATCGCCGAGAGGCCCTTGGTGAGCTGCACGAGGCCGTTGAGCCGTCCCTCCGCCGT
TCCCCATGCACGCTGGATGA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MDSAIPPDAIDDESRDTLTGLAGIASASDWLDRNGAKGFVHAMLLGLHRFRSVNLAYGQSAGDIALVELAQRIRIFADEE
IGGDTLVARVGGGDFLVASAGKVSRERWQWLAEALARRVSRVLPLRGEELQLAPRIALLRGQPGEGGPALLDRLDQALTT
LQQQPARRLQWADGSHLARGRSAARLEADMIGAMARDEIGIVFQPQYAVAGGDIVGVEALARWDHPQLGRIGAETLFALA
ERGDHVAQVSRHIAGRAMWQAVEWKPVIPLSLNITAEDLGDDRLVEDCRLLLAQTGYPPSSLTVEVTEHALIADFERSAA
ALEQLARLGVRIALDDFGAGYANFRTLKALPVNTLKLDASLVRDIDRDPRDRAILRAIVAMARALGQKVVVEGIERESQL
QVLAAEGCDAFQGFLRSGPIPADQIAALSR

Sequences:

>Translated_430_residues
MDSAIPPDAIDDESRDTLTGLAGIASASDWLDRNGAKGFVHAMLLGLHRFRSVNLAYGQSAGDIALVELAQRIRIFADEE
IGGDTLVARVGGGDFLVASAGKVSRERWQWLAEALARRVSRVLPLRGEELQLAPRIALLRGQPGEGGPALLDRLDQALTT
LQQQPARRLQWADGSHLARGRSAARLEADMIGAMARDEIGIVFQPQYAVAGGDIVGVEALARWDHPQLGRIGAETLFALA
ERGDHVAQVSRHIAGRAMWQAVEWKPVIPLSLNITAEDLGDDRLVEDCRLLLAQTGYPPSSLTVEVTEHALIADFERSAA
ALEQLARLGVRIALDDFGAGYANFRTLKALPVNTLKLDASLVRDIDRDPRDRAILRAIVAMARALGQKVVVEGIERESQL
QVLAAEGCDAFQGFLRSGPIPADQIAALSR
>Mature_430_residues
MDSAIPPDAIDDESRDTLTGLAGIASASDWLDRNGAKGFVHAMLLGLHRFRSVNLAYGQSAGDIALVELAQRIRIFADEE
IGGDTLVARVGGGDFLVASAGKVSRERWQWLAEALARRVSRVLPLRGEELQLAPRIALLRGQPGEGGPALLDRLDQALTT
LQQQPARRLQWADGSHLARGRSAARLEADMIGAMARDEIGIVFQPQYAVAGGDIVGVEALARWDHPQLGRIGAETLFALA
ERGDHVAQVSRHIAGRAMWQAVEWKPVIPLSLNITAEDLGDDRLVEDCRLLLAQTGYPPSSLTVEVTEHALIADFERSAA
ALEQLARLGVRIALDDFGAGYANFRTLKALPVNTLKLDASLVRDIDRDPRDRAILRAIVAMARALGQKVVVEGIERESQL
QVLAAEGCDAFQGFLRSGPIPADQIAALSR

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=421, Percent_Identity=28.0285035629454, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI87081921, Length=415, Percent_Identity=26.7469879518072, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI226510982, Length=399, Percent_Identity=29.0726817042606, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=29.2887029288703, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790496, Length=232, Percent_Identity=27.1551724137931, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787055, Length=284, Percent_Identity=26.4084507042254, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=25.5230125523013, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI87081980, Length=234, Percent_Identity=26.9230769230769, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081743, Length=234, Percent_Identity=28.6324786324786, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081845, Length=232, Percent_Identity=28.448275862069, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87082096, Length=123, Percent_Identity=38.2113821138211, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788849, Length=152, Percent_Identity=31.5789473684211, Blast_Score=85, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 46458; Mature: 46458

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSAIPPDAIDDESRDTLTGLAGIASASDWLDRNGAKGFVHAMLLGLHRFRSVNLAYGQS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEECCC
AGDIALVELAQRIRIFADEEIGGDTLVARVGGGDFLVASAGKVSRERWQWLAEALARRVS
CCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHH
RVLPLRGEELQLAPRIALLRGQPGEGGPALLDRLDQALTTLQQQPARRLQWADGSHLARG
HHCCCCCCCEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCCCCCHHHCC
RSAARLEADMIGAMARDEIGIVFQPQYAVAGGDIVGVEALARWDHPQLGRIGAETLFALA
CCHHHHHHHHHHHHHHCCCCEEECCCEEECCCCEEHHHHHHHCCCCCCCHHHHHHHHHHH
ERGDHVAQVSRHIAGRAMWQAVEWKPVIPLSLNITAEDLGDDRLVEDCRLLLAQTGYPPS
HCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCC
SLTVEVTEHALIADFERSAAALEQLARLGVRIALDDFGAGYANFRTLKALPVNTLKLDAS
CEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCEEEEECCCCCEEHHHH
LVRDIDRDPRDRAILRAIVAMARALGQKVVVEGIERESQLQVLAAEGCDAFQGFLRSGPI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCC
PADQIAALSR
CHHHHHHCCC
>Mature Secondary Structure
MDSAIPPDAIDDESRDTLTGLAGIASASDWLDRNGAKGFVHAMLLGLHRFRSVNLAYGQS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEECCC
AGDIALVELAQRIRIFADEEIGGDTLVARVGGGDFLVASAGKVSRERWQWLAEALARRVS
CCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHH
RVLPLRGEELQLAPRIALLRGQPGEGGPALLDRLDQALTTLQQQPARRLQWADGSHLARG
HHCCCCCCCEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCCCCCHHHCC
RSAARLEADMIGAMARDEIGIVFQPQYAVAGGDIVGVEALARWDHPQLGRIGAETLFALA
CCHHHHHHHHHHHHHHCCCCEEECCCEEECCCCEEHHHHHHHCCCCCCCHHHHHHHHHHH
ERGDHVAQVSRHIAGRAMWQAVEWKPVIPLSLNITAEDLGDDRLVEDCRLLLAQTGYPPS
HCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCC
SLTVEVTEHALIADFERSAAALEQLARLGVRIALDDFGAGYANFRTLKALPVNTLKLDAS
CEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCEEEEECCCCCEEHHHH
LVRDIDRDPRDRAILRAIVAMARALGQKVVVEGIERESQLQVLAAEGCDAFQGFLRSGPI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCC
PADQIAALSR
CHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]