| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is sacC [H]
Identifier: 87199901
GI number: 87199901
Start: 1989933
End: 1991255
Strand: Direct
Name: sacC [H]
Synonym: Saro_1884
Alternate gene names: 87199901
Gene position: 1989933-1991255 (Clockwise)
Preceding gene: 87199900
Following gene: 87199905
Centisome position: 55.87
GC content: 66.89
Gene sequence:
>1323_bases ATGCGACCCCTGTACCATTACGCGCCCGCCGCCAACTGGCTGAGCGACCCCAACGGCCTCGTGTGGCAGGATGGGGAGTG GCACCTGTTCTACCAGTACAATCCCTTCGGCGAGGACTGGGGGCACATGTCCTGGGGCCACGCGGTCAGTCGCGATCTTG TGACTTGGCAGGAACTGCCGGTGGCTCTTGCCGAAGAAGACGGGACGATGATCTTCTCGGGATCTGCAGTCATCGATCAC CAGGGCAGCGCGGGCTTCGGAAAGGGCGCGATGGTCGCGGTCTATACCGGCGCGCGAACCGACCGGGCGCATCAGTTCCA GAGCATTGCCGCCAGCACGGACCGGGGGCGCACTTTCACCAAGTTCACGGGCAACCCGGTGCTCGACCTGCAAATGGCGG ACTTCCGCGATCCGAACGTGTTCTGGCACGGGCCGTCGGGCCGGTGGATCATGTCGGTCGTGCTTTCGGAGGAGAACCGC GCGCAATTGTACGCTTCGGTGGACTTGAGGCACTGGGATCTGCTGTCCGATATTGGGCGCGACGGTGCGCCCGGGCACTT GTGGGAATGCCCCTGGATGGTCGAGTTGCCGGTGGAGGGCACCGACGAGACACGTTGGCTGTTCAAGGTCGATGTCCTGT CCGGCGCGGCAGGCCAGGCATCGCCGTGGCGCGTGGGGCATTTCGACGGAAGGCGGTTCGTTCCGGAGACCGGTTGGGCG GTGGGTGACCACGGGCCTGACTTCTATGCGGCAATCGGTTGGAACGCCGCCCCGGATGCGGAAGGACGACCCGTCTGGAT CGGATGGGCGGGCAATCACGCCTATCAGAAGTACCTCGAGCCGCAGGGCTGGCGCGGCGCGATGACGCTGCCGCGCCGTG TCTCGCTTCGCCGTGACGAAAGTGGCTACGCGCTGGTGCAGGAAGTGGAACCGGCCTGCCGCGCTCTGTTCGGCAAGGCC GAGGCCACGTCGCTGTGCGATGGGTGCATCCCGCTGCCGTCAGCGGCGCTGCTGAGCTTTCCGGCCGGCAAGGACTGGTC CTTCAGGATCGAGGACGATCATGGGCGCAGCATCGAGTGCGCGCTCTCGGGGGGGCGGCTGACCGTGCGCCGACACGACC CGGTGACGCCGCAGCTCGAACATCGCGCGGCGATGGAAGCAGGGAAGGGCCCTGTCGAACTGTGGCTCGATGCAGGCAGC CTTGAGGTCTTCGCGAACCGGGGCGGGGCAGTTCTGACGTTGCAGCATCGCCTCGCCGGCGAGGCCTGGGCCTTGCGCGG CGAGGGCGCGTGCAGCGTGGCCTATCCCGCCGCGATGGCCTGA
Upstream 100 bases:
>100_bases GCCCTTTTCCCTTCGACCATGTGGCACGGCACCGTCCCCTTCGCGGATGGCGAACGGATGACCATAGCCTTCGACATCGT ACCCAACCTGAAAGCCTGAA
Downstream 100 bases:
>100_bases CGGCCCAGTTCGATGGCGCCGGTGATCCCGGCGTCGTCGCCTAGGCCCGGGGTCACGATGTAGCTTTCGAGCCCATCGTC CAGTCGCGGATGATGGACAT
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Beta-D-fructofuranosidase; Exo-beta-D-fructosidase; Exo-levanase [H]
Number of amino acids: Translated: 440; Mature: 440
Protein sequence:
>440_residues MRPLYHYAPAANWLSDPNGLVWQDGEWHLFYQYNPFGEDWGHMSWGHAVSRDLVTWQELPVALAEEDGTMIFSGSAVIDH QGSAGFGKGAMVAVYTGARTDRAHQFQSIAASTDRGRTFTKFTGNPVLDLQMADFRDPNVFWHGPSGRWIMSVVLSEENR AQLYASVDLRHWDLLSDIGRDGAPGHLWECPWMVELPVEGTDETRWLFKVDVLSGAAGQASPWRVGHFDGRRFVPETGWA VGDHGPDFYAAIGWNAAPDAEGRPVWIGWAGNHAYQKYLEPQGWRGAMTLPRRVSLRRDESGYALVQEVEPACRALFGKA EATSLCDGCIPLPSAALLSFPAGKDWSFRIEDDHGRSIECALSGGRLTVRRHDPVTPQLEHRAAMEAGKGPVELWLDAGS LEVFANRGGAVLTLQHRLAGEAWALRGEGACSVAYPAAMA
Sequences:
>Translated_440_residues MRPLYHYAPAANWLSDPNGLVWQDGEWHLFYQYNPFGEDWGHMSWGHAVSRDLVTWQELPVALAEEDGTMIFSGSAVIDH QGSAGFGKGAMVAVYTGARTDRAHQFQSIAASTDRGRTFTKFTGNPVLDLQMADFRDPNVFWHGPSGRWIMSVVLSEENR AQLYASVDLRHWDLLSDIGRDGAPGHLWECPWMVELPVEGTDETRWLFKVDVLSGAAGQASPWRVGHFDGRRFVPETGWA VGDHGPDFYAAIGWNAAPDAEGRPVWIGWAGNHAYQKYLEPQGWRGAMTLPRRVSLRRDESGYALVQEVEPACRALFGKA EATSLCDGCIPLPSAALLSFPAGKDWSFRIEDDHGRSIECALSGGRLTVRRHDPVTPQLEHRAAMEAGKGPVELWLDAGS LEVFANRGGAVLTLQHRLAGEAWALRGEGACSVAYPAAMA >Mature_440_residues MRPLYHYAPAANWLSDPNGLVWQDGEWHLFYQYNPFGEDWGHMSWGHAVSRDLVTWQELPVALAEEDGTMIFSGSAVIDH QGSAGFGKGAMVAVYTGARTDRAHQFQSIAASTDRGRTFTKFTGNPVLDLQMADFRDPNVFWHGPSGRWIMSVVLSEENR AQLYASVDLRHWDLLSDIGRDGAPGHLWECPWMVELPVEGTDETRWLFKVDVLSGAAGQASPWRVGHFDGRRFVPETGWA VGDHGPDFYAAIGWNAAPDAEGRPVWIGWAGNHAYQKYLEPQGWRGAMTLPRRVSLRRDESGYALVQEVEPACRALFGKA EATSLCDGCIPLPSAALLSFPAGKDWSFRIEDDHGRSIECALSGGRLTVRRHDPVTPQLEHRAAMEAGKGPVELWLDAGS LEVFANRGGAVLTLQHRLAGEAWALRGEGACSVAYPAAMA
Specific function: Exo-fructosidase that can hydrolyze both levan and inulin, leading to the production of free fructose. Is also able to hydrolyze sucrose and to a small extent raffinose, but not melezitose, stachylose, cellobiose, maltose, and lactose [H]
COG id: COG1621
COG function: function code G; Beta-fructosidases (levanase/invertase)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 32 family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322029, Length=312, Percent_Identity=35.5769230769231, Blast_Score=204, Evalue=3e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008985 - InterPro: IPR010496 - InterPro: IPR001362 - InterPro: IPR018053 - InterPro: IPR013189 - InterPro: IPR013148 - InterPro: IPR011040 [H]
Pfam domain/function: PF06439 DUF1080; PF08244 Glyco_hydro_32C; PF00251 Glyco_hydro_32N [H]
EC number: =3.2.1.80 [H]
Molecular weight: Translated: 48509; Mature: 48509
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPLYHYAPAANWLSDPNGLVWQDGEWHLFYQYNPFGEDWGHMSWGHAVSRDLVTWQELP CCCCCCCCCCCHHCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC VALAEEDGTMIFSGSAVIDHQGSAGFGKGAMVAVYTGARTDRAHQFQSIAASTDRGRTFT EEEECCCCCEEEECCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEE KFTGNPVLDLQMADFRDPNVFWHGPSGRWIMSVVLSEENRAQLYASVDLRHWDLLSDIGR EECCCEEEEEEECCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHCC DGAPGHLWECPWMVELPVEGTDETRWLFKVDVLSGAAGQASPWRVGHFDGRRFVPETGWA CCCCCCEECCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCCEEEECCCCCEECCCCCCC VGDHGPDFYAAIGWNAAPDAEGRPVWIGWAGNHAYQKYLEPQGWRGAMTLPRRVSLRRDE CCCCCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCEEEEEECC SGYALVQEVEPACRALFGKAEATSLCDGCIPLPSAALLSFPAGKDWSFRIEDDHGRSIEC CCCEEHHHHCHHHHHHHCCCCHHHHHCCCCCCCCHHHEECCCCCCEEEEEECCCCCEEEE ALSGGRLTVRRHDPVTPQLEHRAAMEAGKGPVELWLDAGSLEVFANRGGAVLTLQHRLAG EEECCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCEEEEECCCCEEEEEEHHHCC EAWALRGEGACSVAYPAAMA CEEEECCCCCEEECCCCCCC >Mature Secondary Structure MRPLYHYAPAANWLSDPNGLVWQDGEWHLFYQYNPFGEDWGHMSWGHAVSRDLVTWQELP CCCCCCCCCCCHHCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC VALAEEDGTMIFSGSAVIDHQGSAGFGKGAMVAVYTGARTDRAHQFQSIAASTDRGRTFT EEEECCCCCEEEECCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEE KFTGNPVLDLQMADFRDPNVFWHGPSGRWIMSVVLSEENRAQLYASVDLRHWDLLSDIGR EECCCEEEEEEECCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHCC DGAPGHLWECPWMVELPVEGTDETRWLFKVDVLSGAAGQASPWRVGHFDGRRFVPETGWA CCCCCCEECCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCCEEEECCCCCEECCCCCCC VGDHGPDFYAAIGWNAAPDAEGRPVWIGWAGNHAYQKYLEPQGWRGAMTLPRRVSLRRDE CCCCCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCEEEEEECC SGYALVQEVEPACRALFGKAEATSLCDGCIPLPSAALLSFPAGKDWSFRIEDDHGRSIEC CCCEEHHHHCHHHHHHHCCCCHHHHHCCCCCCCCHHHEECCCCCCEEEEEECCCCCEEEE ALSGGRLTVRRHDPVTPQLEHRAAMEAGKGPVELWLDAGSLEVFANRGGAVLTLQHRLAG EEECCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCEEEEECCCCEEEEEEHHHCC EAWALRGEGACSVAYPAAMA CEEEECCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3112519; 3120151; 9141695; 9384377; 2117666 [H]