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The map label for this gene is smf [H]

Identifier: 87199818

GI number: 87199818

Start: 1898325

End: 1899452

Strand: Direct

Name: smf [H]

Synonym: Saro_1801

Alternate gene names: 87199818

Gene position: 1898325-1899452 (Clockwise)

Preceding gene: 87199817

Following gene: 87199819

Centisome position: 53.3

GC content: 68.44

Gene sequence:

>1128_bases
GTGAACGCGGCTGCCGCAGCCACGCTGACCCGGGACGAGGCGTTTGCCCGTATCCGCCTGCTGCGGTCCCCCAATATTGG
GCCGGTAAGCTACCACCAGCTCCTGCGCCGCTTCACCACCGCCAGCGCGGCCCTGGAAGCCTTGCCCGATCTCGCCGTGC
GTGGAGCGGCGCGCGGAAGGGCGGCTTACCGCCCTATTCCGACCGAACGCATTGAGCGCGAAGTGGCGAGGGTGCGGGCG
GCGGGCGCACGATACATGTTCCATGACAGTCCCGACTATCCGGCGCTCCTCGGAAATCTGGAGAACCCGCCGCCAGTACT
GACGGTGCGCGGGGATGCGGCGCTGCTTTCCCGGCCGTCCGTCGCGATGGTCGGGGCTCGCAACGCTTCGGCTGCGGCGG
TCAAGCTTTCGCGCGACTTCGCTTCGGCGCTGGCCGCAAGGGGCTATGCCGTAGTCTCCGGTCTTGCCCGAGGTATCGAT
GCGGCTGCGCATCGCGGTGCGCTGGCCGGCATGGCCGACGGGGGCGGCACCGTCGGCGTGATCGCCAGCGGGATCGACGT
CACCTATCCGCCCGAACATGGCGACCTGCAGGAGCAGGTTGCGCACGAGGGCTTGCTGATCGCCGAGATGCCCCCGGGGA
CCGAGCCGCTGGCCCGGCATTTCCCGTGGCGCAACCGAATCATCGCGGGCCTTGCAACCGGTACGTTGGTCGTCGAGGCC
GCGCCAAGGTCGGGGTCGCTGATCACGGCCCGGCTCGCGGCAGAGGCGGGGCGCGAGGTGATGGCCATTCCCGGCTCCCC
GCTCGACAGCCGTTCCCACGGGTGCAACCAGCTTATCCGTGACGGGGCGATTCTCGTGCAGTCGCCCGACGACGTGGTCG
AACTCCTGGTCGGCTTCGAAGGACAGCCGCGCTCCACCGTTCGGGAGGTTCCGGACGATTTCGCATCTGACAGCTGCGAC
GAACAGGCGGACGTTGCGGACCTTTTGACGACCGCGCCGATCGGTGTCGATGAACTGATCCGGCAAAGCCGGGCAAGCGC
GGGCGCGGTGCAGATGGCGCTGATCGAACTCGAACTGGCAGGCAGGCTCCTGCGTCATGCCGCTGGCCGTGTTTCCTTGA
AGGGGTGA

Upstream 100 bases:

>100_bases
TTCCGGTTCTCGCGCTGCTGGCTCTCCTCGTGCTGTATCTGCACCGGGAAAACATTGCCCGCCTTCGCGCCGGAACCGAA
CCGAAGGTCGGCAGCAGGAA

Downstream 100 bases:

>100_bases
CTACGATGGCAGACCTTCGCCTTGCGCGCCGCATCTTCCGGGGTGCCGCAATCTACGGCTTCATCGTGCTTCCGCCGATG
CTGCTCGCGCCCTGGCCGCA

Product: DNA processing protein DprA

Products: NA

Alternate protein names: DNA-processing chain A [H]

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MNAAAAATLTRDEAFARIRLLRSPNIGPVSYHQLLRRFTTASAALEALPDLAVRGAARGRAAYRPIPTERIEREVARVRA
AGARYMFHDSPDYPALLGNLENPPPVLTVRGDAALLSRPSVAMVGARNASAAAVKLSRDFASALAARGYAVVSGLARGID
AAAHRGALAGMADGGGTVGVIASGIDVTYPPEHGDLQEQVAHEGLLIAEMPPGTEPLARHFPWRNRIIAGLATGTLVVEA
APRSGSLITARLAAEAGREVMAIPGSPLDSRSHGCNQLIRDGAILVQSPDDVVELLVGFEGQPRSTVREVPDDFASDSCD
EQADVADLLTTAPIGVDELIRQSRASAGAVQMALIELELAGRLLRHAAGRVSLKG

Sequences:

>Translated_375_residues
MNAAAAATLTRDEAFARIRLLRSPNIGPVSYHQLLRRFTTASAALEALPDLAVRGAARGRAAYRPIPTERIEREVARVRA
AGARYMFHDSPDYPALLGNLENPPPVLTVRGDAALLSRPSVAMVGARNASAAAVKLSRDFASALAARGYAVVSGLARGID
AAAHRGALAGMADGGGTVGVIASGIDVTYPPEHGDLQEQVAHEGLLIAEMPPGTEPLARHFPWRNRIIAGLATGTLVVEA
APRSGSLITARLAAEAGREVMAIPGSPLDSRSHGCNQLIRDGAILVQSPDDVVELLVGFEGQPRSTVREVPDDFASDSCD
EQADVADLLTTAPIGVDELIRQSRASAGAVQMALIELELAGRLLRHAAGRVSLKG
>Mature_375_residues
MNAAAAATLTRDEAFARIRLLRSPNIGPVSYHQLLRRFTTASAALEALPDLAVRGAARGRAAYRPIPTERIEREVARVRA
AGARYMFHDSPDYPALLGNLENPPPVLTVRGDAALLSRPSVAMVGARNASAAAVKLSRDFASALAARGYAVVSGLARGID
AAAHRGALAGMADGGGTVGVIASGIDVTYPPEHGDLQEQVAHEGLLIAEMPPGTEPLARHFPWRNRIIAGLATGTLVVEA
APRSGSLITARLAAEAGREVMAIPGSPLDSRSHGCNQLIRDGAILVQSPDDVVELLVGFEGQPRSTVREVPDDFASDSCD
EQADVADLLTTAPIGVDELIRQSRASAGAVQMALIELELAGRLLRHAAGRVSLKG

Specific function: Essential for efficient chromosomal DNA transformation but not required for plasmid transformation [H]

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=330, Percent_Identity=36.6666666666667, Blast_Score=159, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 39258; Mature: 39258

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAAAAATLTRDEAFARIRLLRSPNIGPVSYHQLLRRFTTASAALEALPDLAVRGAARGR
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AAYRPIPTERIEREVARVRAAGARYMFHDSPDYPALLGNLENPPPVLTVRGDAALLSRPS
CCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHCCCCCCCCEEEECCCHHHHCCCC
VAMVGARNASAAAVKLSRDFASALAARGYAVVSGLARGIDAAAHRGALAGMADGGGTVGV
EEEEECCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEE
IASGIDVTYPPEHGDLQEQVAHEGLLIAEMPPGTEPLARHFPWRNRIIAGLATGTLVVEA
EECCCEECCCCCCCCHHHHHHHCCEEEEECCCCCCHHHHHCCHHHHEEHEEECCEEEEEE
APRSGSLITARLAAEAGREVMAIPGSPLDSRSHGCNQLIRDGAILVQSPDDVVELLVGFE
CCCCCCEEEEEHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHCCC
GQPRSTVREVPDDFASDSCDEQADVADLLTTAPIGVDELIRQSRASAGAVQMALIELELA
CCCHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
GRLLRHAAGRVSLKG
HHHHHHHCCCEECCC
>Mature Secondary Structure
MNAAAAATLTRDEAFARIRLLRSPNIGPVSYHQLLRRFTTASAALEALPDLAVRGAARGR
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AAYRPIPTERIEREVARVRAAGARYMFHDSPDYPALLGNLENPPPVLTVRGDAALLSRPS
CCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHCCCCCCCCEEEECCCHHHHCCCC
VAMVGARNASAAAVKLSRDFASALAARGYAVVSGLARGIDAAAHRGALAGMADGGGTVGV
EEEEECCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEE
IASGIDVTYPPEHGDLQEQVAHEGLLIAEMPPGTEPLARHFPWRNRIIAGLATGTLVVEA
EECCCEECCCCCCCCHHHHHHHCCEEEEECCCCCCHHHHHCCHHHHEEHEEECCEEEEEE
APRSGSLITARLAAEAGREVMAIPGSPLDSRSHGCNQLIRDGAILVQSPDDVVELLVGFE
CCCCCCEEEEEHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHCCC
GQPRSTVREVPDDFASDSCDEQADVADLLTTAPIGVDELIRQSRASAGAVQMALIELELA
CCCHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
GRLLRHAAGRVSLKG
HHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7768823; 7542800 [H]