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The map label for this gene is sdhC [H]

Identifier: 87199761

GI number: 87199761

Start: 1838728

End: 1839153

Strand: Direct

Name: sdhC [H]

Synonym: Saro_1744

Alternate gene names: 87199761

Gene position: 1838728-1839153 (Clockwise)

Preceding gene: 87199757

Following gene: 87199762

Centisome position: 51.63

GC content: 65.96

Gene sequence:

>426_bases
ATGGCGCAGGCGCGCAAAGCACGGCCGATTTCGCCGCATCTCCAGATCTGGCGCTGGGGCCCGGCCATGCTGGTCTCGAT
CCTGCACCGCATCACCGGCAATGGCCTCGCCTTCGCGGGCCTTGGGCTTCTGCTGTGGTGGGTCGGTGCGCTGGCAAGCG
GTCCGGAAAGCTACCAGACCTTCCTCGACTGGGTCTGGGTCGGCAGTGCCGGCGGCATCCAGGCCGTTACCGCGATCCTC
GGCAAGATCGTCCTCGTCGGCCTTAGCTGGGCCTTCTTCCAGCACGCCGCCTCGGGCATCCGCCACCTGATCCTCGACAT
CGGCGCCGGCTACGAACTGGATGCCAATGCGCGCTGGTCGAGCCTGACGATCGTCATCTCGGTCCTTCTCACCATCGCAT
TCTGGGCTTTCGTGCTGCTGCGCTGA

Upstream 100 bases:

>100_bases
ATCCCGCATACGCTTGCGCGCCGGGTCTTTTCGACTAATAGGACTCGCACTCCGGTCGCGGGGAAGCCGCGATCCATGCT
GACACCAAGGGGGTTTGTTC

Downstream 100 bases:

>100_bases
GCGCCGGCACGAACCGCAAGCAAGGAAGGCTTACACCCATGGGTAACGGCACCTCCATCGGTCGCGTTCGCGGGCTGGGT
TCCAGCCACGAGGGCACGCA

Product: succinate dehydrogenase subunit C

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAQARKARPISPHLQIWRWGPAMLVSILHRITGNGLAFAGLGLLLWWVGALASGPESYQTFLDWVWVGSAGGIQAVTAIL
GKIVLVGLSWAFFQHAASGIRHLILDIGAGYELDANARWSSLTIVISVLLTIAFWAFVLLR

Sequences:

>Translated_141_residues
MAQARKARPISPHLQIWRWGPAMLVSILHRITGNGLAFAGLGLLLWWVGALASGPESYQTFLDWVWVGSAGGIQAVTAIL
GKIVLVGLSWAFFQHAASGIRHLILDIGAGYELDANARWSSLTIVISVLLTIAFWAFVLLR
>Mature_140_residues
AQARKARPISPHLQIWRWGPAMLVSILHRITGNGLAFAGLGLLLWWVGALASGPESYQTFLDWVWVGSAGGIQAVTAILG
KIVLVGLSWAFFQHAASGIRHLILDIGAGYELDANARWSSLTIVISVLLTIAFWAFVLLR

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=135, Percent_Identity=31.1111111111111, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 15346; Mature: 15215

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: PS01000 SDH_CYT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQARKARPISPHLQIWRWGPAMLVSILHRITGNGLAFAGLGLLLWWVGALASGPESYQT
CCCCCCCCCCCCCHHEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
FLDWVWVGSAGGIQAVTAILGKIVLVGLSWAFFQHAASGIRHLILDIGAGYELDANARWS
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHH
SLTIVISVLLTIAFWAFVLLR
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQARKARPISPHLQIWRWGPAMLVSILHRITGNGLAFAGLGLLLWWVGALASGPESYQT
CCCCCCCCCCCCHHEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
FLDWVWVGSAGGIQAVTAILGKIVLVGLSWAFFQHAASGIRHLILDIGAGYELDANARWS
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHH
SLTIVISVLLTIAFWAFVLLR
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA