Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

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The map label for this gene is yceI [C]

Identifier: 87199728

GI number: 87199728

Start: 1797851

End: 1799113

Strand: Direct

Name: yceI [C]

Synonym: Saro_1711

Alternate gene names: 87199728

Gene position: 1797851-1799113 (Clockwise)

Preceding gene: 87199727

Following gene: 87199734

Centisome position: 50.48

GC content: 66.9

Gene sequence:

>1263_bases
ATGACCACGATAAGTCCGGCGCGCTATTCGGCGGCGGCAATCACGCTTCACTGGATGATTGCGTTCCTGCTGCTGTTCCA
GATCGGACTGGGCTGGGCGCTGGAGGACCTGCCGGAGGGCGTGGCGCAGTTTGCCGGATACCAGTTCCACAAGTCGGTCG
GGATCGCGATCCTCATCCTCAGCCTGGGTCGGCTCGCGGTGCGGCTGGTGAAGCCACGGCCGGCGCCGGTTCCAGCGGGA
AGGGCGCAGGCCTTTCTCGCGGCGGCGGTCCACGCGTTGCTCTATGGCGTGATGATCGTCGGGCCGCTTACGGGTTGGAT
CATCGTTTCGACCGCCAAGGTGCGATTGCAGACCATGCTGTTCGGCACCGTCCCGTGGCCCGACCTGCCGGTAGGACAAG
CGCTGCATGAACCAGCCGAGGTACTTCACGGCTTGCTCGGCACGGTCGGCGTTGCGCTGATCGTGCTGCATGTCGTCGGC
GCGATCTATCACCATGTGAAGCGCGAGGACGTGATAGGGCGGATGCTTCCGCGCTCCATCGCGAGCCACAAGGCGATCGG
CGTCGCGGCGGGCGTGGCGATTGTCGCGGGTCTGCTGGCGCTTTTCGGTGGACGGACGATGTCCTTCGCCGTGCCGACGG
CGGCGCCTTCGGTCGAGGCCTCGTCAGCGCCCGTCGAGGCCGCGTCGCAGGGGGCAGTAGAGGAGATGCCCGAGGCCGCG
CCCTCGGAGGTTTCGTCGGAGGCTGCCAGCGCTGTGGCCAAGGCTGCGCCGTGGAAGCTGGAGAAGGGCGGCCGACTGGG
CTTTTCCGCCGAATACAGCGGAGAGGCGATCCGGGGCACGTTCAAGCGCTGGGAGGCAGATATCGTGTTCGATCCGGAGG
ACCTTGCCGGCTCCTCGATTCGGGTGAACATCGATCTCGCCTCCGTCGAAAGCGGCGATGCCCAGCGCGACGACATGCTG
AAGAGCGACAGCTTCTTCGGCGTTGGCGCCGATCCACAGGCCAGGTTCGTTGCAACCTCGATCCGCAAGCGGGGCGAGGG
GCGCTATGTCGCGAACGGGACACTGACCCTGCACGGCAAGGCGCGGCCGCTTGCCGTGGCGTTTACGCTGAAGATAGCGG
GCGACCGGGCGACGGCCAGCGGCAGCGCAACCTTGCAGCGCCTGGCATTCGGCGTCGGCGAGGCCGAGTGGTCTGCGACG
GACCAGTTAAAGGACGCGGTCGGCGTCGACTTCTCGTTGGCGGCGCGGCGGATCAGCCCTTGA

Upstream 100 bases:

>100_bases
AAGGCTGGCCCATTTCCGCCTCTTTGCCGCGGACTCGCTGCGGATGGACAAACGGGACGGTTACAGTTCATAGCAGTCCC
CGGATTGGGGAGAGCCATCG

Downstream 100 bases:

>100_bases
TTCCGGCGAAGAAGAACTCGGAATAGCGTCTGGCCCAGGCTTCGGTCTGGGTCTGGTCATAGCACCGTGCGCCGCCGCTC
AGCCGTGCATGGCCGAGGAT

Product: YceI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MTTISPARYSAAAITLHWMIAFLLLFQIGLGWALEDLPEGVAQFAGYQFHKSVGIAILILSLGRLAVRLVKPRPAPVPAG
RAQAFLAAAVHALLYGVMIVGPLTGWIIVSTAKVRLQTMLFGTVPWPDLPVGQALHEPAEVLHGLLGTVGVALIVLHVVG
AIYHHVKREDVIGRMLPRSIASHKAIGVAAGVAIVAGLLALFGGRTMSFAVPTAAPSVEASSAPVEAASQGAVEEMPEAA
PSEVSSEAASAVAKAAPWKLEKGGRLGFSAEYSGEAIRGTFKRWEADIVFDPEDLAGSSIRVNIDLASVESGDAQRDDML
KSDSFFGVGADPQARFVATSIRKRGEGRYVANGTLTLHGKARPLAVAFTLKIAGDRATASGSATLQRLAFGVGEAEWSAT
DQLKDAVGVDFSLAARRISP

Sequences:

>Translated_420_residues
MTTISPARYSAAAITLHWMIAFLLLFQIGLGWALEDLPEGVAQFAGYQFHKSVGIAILILSLGRLAVRLVKPRPAPVPAG
RAQAFLAAAVHALLYGVMIVGPLTGWIIVSTAKVRLQTMLFGTVPWPDLPVGQALHEPAEVLHGLLGTVGVALIVLHVVG
AIYHHVKREDVIGRMLPRSIASHKAIGVAAGVAIVAGLLALFGGRTMSFAVPTAAPSVEASSAPVEAASQGAVEEMPEAA
PSEVSSEAASAVAKAAPWKLEKGGRLGFSAEYSGEAIRGTFKRWEADIVFDPEDLAGSSIRVNIDLASVESGDAQRDDML
KSDSFFGVGADPQARFVATSIRKRGEGRYVANGTLTLHGKARPLAVAFTLKIAGDRATASGSATLQRLAFGVGEAEWSAT
DQLKDAVGVDFSLAARRISP
>Mature_419_residues
TTISPARYSAAAITLHWMIAFLLLFQIGLGWALEDLPEGVAQFAGYQFHKSVGIAILILSLGRLAVRLVKPRPAPVPAGR
AQAFLAAAVHALLYGVMIVGPLTGWIIVSTAKVRLQTMLFGTVPWPDLPVGQALHEPAEVLHGLLGTVGVALIVLHVVGA
IYHHVKREDVIGRMLPRSIASHKAIGVAAGVAIVAGLLALFGGRTMSFAVPTAAPSVEASSAPVEAASQGAVEEMPEAAP
SEVSSEAASAVAKAAPWKLEKGGRLGFSAEYSGEAIRGTFKRWEADIVFDPEDLAGSSIRVNIDLASVESGDAQRDDMLK
SDSFFGVGADPQARFVATSIRKRGEGRYVANGTLTLHGKARPLAVAFTLKIAGDRATASGSATLQRLAFGVGEAEWSATD
QLKDAVGVDFSLAARRISP

Specific function: Unknown

COG id: COG2353

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0312 family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787295, Length=132, Percent_Identity=34.0909090909091, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007372 [H]

Pfam domain/function: PF04264 YceI [H]

EC number: NA

Molecular weight: Translated: 43991; Mature: 43860

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTISPARYSAAAITLHWMIAFLLLFQIGLGWALEDLPEGVAQFAGYQFHKSVGIAILIL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SLGRLAVRLVKPRPAPVPAGRAQAFLAAAVHALLYGVMIVGPLTGWIIVSTAKVRLQTML
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHEEHHH
FGTVPWPDLPVGQALHEPAEVLHGLLGTVGVALIVLHVVGAIYHHVKREDVIGRMLPRSI
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASHKAIGVAAGVAIVAGLLALFGGRTMSFAVPTAAPSVEASSAPVEAASQGAVEEMPEAA
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCCHHHCCCCC
PSEVSSEAASAVAKAAPWKLEKGGRLGFSAEYSGEAIRGTFKRWEADIVFDPEDLAGSSI
CHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCHHHCCCEE
RVNIDLASVESGDAQRDDMLKSDSFFGVGADPQARFVATSIRKRGEGRYVANGTLTLHGK
EEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCEEEEECC
ARPLAVAFTLKIAGDRATASGSATLQRLAFGVGEAEWSATDQLKDAVGVDFSLAARRISP
CCEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure 
TTISPARYSAAAITLHWMIAFLLLFQIGLGWALEDLPEGVAQFAGYQFHKSVGIAILIL
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SLGRLAVRLVKPRPAPVPAGRAQAFLAAAVHALLYGVMIVGPLTGWIIVSTAKVRLQTML
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHEEHHH
FGTVPWPDLPVGQALHEPAEVLHGLLGTVGVALIVLHVVGAIYHHVKREDVIGRMLPRSI
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASHKAIGVAAGVAIVAGLLALFGGRTMSFAVPTAAPSVEASSAPVEAASQGAVEEMPEAA
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCCHHHCCCCC
PSEVSSEAASAVAKAAPWKLEKGGRLGFSAEYSGEAIRGTFKRWEADIVFDPEDLAGSSI
CHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCHHHCCCEE
RVNIDLASVESGDAQRDDMLKSDSFFGVGADPQARFVATSIRKRGEGRYVANGTLTLHGK
EEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCEEEEECC
ARPLAVAFTLKIAGDRATASGSATLQRLAFGVGEAEWSATDQLKDAVGVDFSLAARRISP
CCEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]