| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199716
Identifier: 87199716
GI number: 87199716
Start: 1784178
End: 1785101
Strand: Direct
Name: 87199716
Synonym: Saro_1699
Alternate gene names: NA
Gene position: 1784178-1785101 (Clockwise)
Preceding gene: 87199712
Following gene: 87199721
Centisome position: 50.1
GC content: 67.32
Gene sequence:
>924_bases GTGGAGGCGACGAGCGACAGGACCGACGTCATGCTGGCGGATGCCCGGCGCCTCGAGCAGGAGGGACGTCACGACGAAGC CTTTGCCAGCTTCGTCGCCGCAAAGGCGGCCTTGCGCGCCACTACCGACTACGATTTTGCTGCCGAGGAAGCGCTGTTCG AAGCGCTGCGCCGCGCCTTCGCTCGCGAACTGCCGCTCGCGGGCGCCAGCACGGTCACCGCCGCGCCGCTCTTCGTCGTC GGCCTGCCTTGCACCGGCACCGCCCTCCTCGAAAGCATCGTCGCCGCCCATCCGGCCGTCGCGTCCCGCGCCGCGCCGGG AGCAGTGGTGGGTGCCCTGCGACAATCCACCGAGACGGAAGCTGGCTTGCCAATCGATACTGCGGCCATTGCCCGCCTCG CCGGAAGGTCGGCCGACACGTTGGGCCGCAGCTACCTCGCGCGCGCCGGCGCGATGCCGGGCGCCCGTTTCGTCGATGGC GAGGCGATGAATTTCCTTTACGTCGGTGCCATTGCCCAGGCCTTGCCGCGAGCCTCCATCGTCTGCGTCCAGCGGGGGGC GATGGACAGCGTATGGCGCATCTTCACCCAGCGCCCTTCGTCGGTGGGGCAGGGTCTGGAATGGTCGAACAGTCTAATGG AAACAGCGCAATACGTGCTGCTCTTCCAGCGACTTGAAGCGTTCTGGCGGCAGCGCCTTCCCGGCCGTATTCATGAACTG TCCTACGAGCAGTTCCTTGCCGATCGCGATGTGCAGACGCGCCGGATGCTGGCCCATTGCGGGCTCCAGCCCGATCCCGC GTGCCTTGCTGCCGCCGCATCCACGCAGAGCGACGAGGGGCCGATGGGGGCTTGGCGCCCCTATGAAGCGCACCTTGGCG AAGTTGCGGACTTCTTCATCGCCAACGGCATCCCCATCGATTGA
Upstream 100 bases:
>100_bases CGGCGACGCGCGCCATGCGCAGTTTGGCGTAGGGTGCGCTGGTCTGGCGGGCGATAGGCTGGCAGCGCGATGACAGGCAT TGCGCTGCCGGGGGCACCGA
Downstream 100 bases:
>100_bases GGCCGAATGCGCCGTGACCCGAACGGCACCTAAACGCACCTGACCGCACCTGCGACGCGCTGAAGGTCCGCGGCCGTGTC GATATCGACCGCGAGCGATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MEATSDRTDVMLADARRLEQEGRHDEAFASFVAAKAALRATTDYDFAAEEALFEALRRAFARELPLAGASTVTAAPLFVV GLPCTGTALLESIVAAHPAVASRAAPGAVVGALRQSTETEAGLPIDTAAIARLAGRSADTLGRSYLARAGAMPGARFVDG EAMNFLYVGAIAQALPRASIVCVQRGAMDSVWRIFTQRPSSVGQGLEWSNSLMETAQYVLLFQRLEAFWRQRLPGRIHEL SYEQFLADRDVQTRRMLAHCGLQPDPACLAAAASTQSDEGPMGAWRPYEAHLGEVADFFIANGIPID
Sequences:
>Translated_307_residues MEATSDRTDVMLADARRLEQEGRHDEAFASFVAAKAALRATTDYDFAAEEALFEALRRAFARELPLAGASTVTAAPLFVV GLPCTGTALLESIVAAHPAVASRAAPGAVVGALRQSTETEAGLPIDTAAIARLAGRSADTLGRSYLARAGAMPGARFVDG EAMNFLYVGAIAQALPRASIVCVQRGAMDSVWRIFTQRPSSVGQGLEWSNSLMETAQYVLLFQRLEAFWRQRLPGRIHEL SYEQFLADRDVQTRRMLAHCGLQPDPACLAAAASTQSDEGPMGAWRPYEAHLGEVADFFIANGIPID >Mature_307_residues MEATSDRTDVMLADARRLEQEGRHDEAFASFVAAKAALRATTDYDFAAEEALFEALRRAFARELPLAGASTVTAAPLFVV GLPCTGTALLESIVAAHPAVASRAAPGAVVGALRQSTETEAGLPIDTAAIARLAGRSADTLGRSYLARAGAMPGARFVDG EAMNFLYVGAIAQALPRASIVCVQRGAMDSVWRIFTQRPSSVGQGLEWSNSLMETAQYVLLFQRLEAFWRQRLPGRIHEL SYEQFLADRDVQTRRMLAHCGLQPDPACLAAAASTQSDEGPMGAWRPYEAHLGEVADFFIANGIPID
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 8 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000863 - InterPro: IPR001440 - InterPro: IPR011717 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00685 Sulfotransfer_1; PF00515 TPR_1; PF07721 TPR_4 [H]
EC number: NA
Molecular weight: Translated: 32971; Mature: 32971
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEATSDRTDVMLADARRLEQEGRHDEAFASFVAAKAALRATTDYDFAAEEALFEALRRAF CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH ARELPLAGASTVTAAPLFVVGLPCTGTALLESIVAAHPAVASRAAPGAVVGALRQSTETE HHHCCCCCCCHHHHCCHHEEECCCCHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHCCCC AGLPIDTAAIARLAGRSADTLGRSYLARAGAMPGARFVDGEAMNFLYVGAIAQALPRASI CCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCHHE VCVQRGAMDSVWRIFTQRPSSVGQGLEWSNSLMETAQYVLLFQRLEAFWRQRLPGRIHEL EHHHCCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH SYEQFLADRDVQTRRMLAHCGLQPDPACLAAAASTQSDEGPMGAWRPYEAHLGEVADFFI HHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH ANGIPID HCCCCCC >Mature Secondary Structure MEATSDRTDVMLADARRLEQEGRHDEAFASFVAAKAALRATTDYDFAAEEALFEALRRAF CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH ARELPLAGASTVTAAPLFVVGLPCTGTALLESIVAAHPAVASRAAPGAVVGALRQSTETE HHHCCCCCCCHHHHCCHHEEECCCCHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHCCCC AGLPIDTAAIARLAGRSADTLGRSYLARAGAMPGARFVDGEAMNFLYVGAIAQALPRASI CCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCHHE VCVQRGAMDSVWRIFTQRPSSVGQGLEWSNSLMETAQYVLLFQRLEAFWRQRLPGRIHEL EHHHCCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH SYEQFLADRDVQTRRMLAHCGLQPDPACLAAAASTQSDEGPMGAWRPYEAHLGEVADFFI HHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH ANGIPID HCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]