| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199582
Identifier: 87199582
GI number: 87199582
Start: 1623417
End: 1623935
Strand: Direct
Name: 87199582
Synonym: Saro_1565
Alternate gene names: NA
Gene position: 1623417-1623935 (Clockwise)
Preceding gene: 87199581
Following gene: 87199583
Centisome position: 45.58
GC content: 69.75
Gene sequence:
>519_bases ATGCTGACCGTTCGCGCTCGGCCCGGCAGTCTGACCGATACCGCCGCACGTCTTGTCACTGCCGCAGGCATCCCGTCGGC CTTGGTCGATGCCATGCCCCCACCGCGCGCCGCCGCACTGGCGGGGCTTGGCGACGCCGACTTTGAATCCGCCTTCGTCG TTCCGCTAGCCGACCTGGCCCAGACTCTCGCTGACCTGCTCCCGCTCCACCGCCGCATCGTTCTCGTCGGCTCCATTGCG GGCCTAGGCGACTGGGATGCGGTGCTTTCCGGAGCCTTCGCAGCGGGAGCGACCGGGCTGATGCGCTCGGTCGCGCTGGA ATTCATGTCGCATGGCGTGACGATCAACCTCATCGCCGCGCCCTCGGACGATCCTTGCCACGCCCTCCAGGTCGCCGCGC TTGCCAGCGCGCTGCTTGCATCGGATGGCGTCAGCGGGCAGGCCGTTCCCTGCGACGGCGGCGCGAACCTGCGCATGAGC CGTGCCCGCCCCCGCGCTGCGCCTTTACGGGAGCCATGA
Upstream 100 bases:
>100_bases CGATCGCCGGTGCCGTCGCTTACCTCGCCTCTGCGGCCGGGCGCGCGGTCAACGGGCAGGTCCTGCTGGTGGACGGTGGC AAGTCGCTCGGCGTCGCGCC
Downstream 100 bases:
>100_bases TCGCAGGCATGAAACCTGCCGCAGGCCAGCATCAATCGCCGAGGGAGAACCATGTCGCAACCCGCGGTCAAGTCCGCGCT CCGTACGTTCGAAGTCCTCG
Product: short chain dehydrogenase/reductase family oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 172; Mature: 172
Protein sequence:
>172_residues MLTVRARPGSLTDTAARLVTAAGIPSALVDAMPPPRAAALAGLGDADFESAFVVPLADLAQTLADLLPLHRRIVLVGSIA GLGDWDAVLSGAFAAGATGLMRSVALEFMSHGVTINLIAAPSDDPCHALQVAALASALLASDGVSGQAVPCDGGANLRMS RARPRAAPLREP
Sequences:
>Translated_172_residues MLTVRARPGSLTDTAARLVTAAGIPSALVDAMPPPRAAALAGLGDADFESAFVVPLADLAQTLADLLPLHRRIVLVGSIA GLGDWDAVLSGAFAAGATGLMRSVALEFMSHGVTINLIAAPSDDPCHALQVAALASALLASDGVSGQAVPCDGGANLRMS RARPRAAPLREP >Mature_172_residues MLTVRARPGSLTDTAARLVTAAGIPSALVDAMPPPRAAALAGLGDADFESAFVVPLADLAQTLADLLPLHRRIVLVGSIA GLGDWDAVLSGAFAAGATGLMRSVALEFMSHGVTINLIAAPSDDPCHALQVAALASALLASDGVSGQAVPCDGGANLRMS RARPRAAPLREP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17322; Mature: 17322
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTVRARPGSLTDTAARLVTAAGIPSALVDAMPPPRAAALAGLGDADFESAFVVPLADLA CEEECCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHCCCCCCCCCEEEEEHHHHH QTLADLLPLHRRIVLVGSIAGLGDWDAVLSGAFAAGATGLMRSVALEFMSHGVTINLIAA HHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC PSDDPCHALQVAALASALLASDGVSGQAVPCDGGANLRMSRARPRAAPLREP CCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECCCCCCCCCCCCC >Mature Secondary Structure MLTVRARPGSLTDTAARLVTAAGIPSALVDAMPPPRAAALAGLGDADFESAFVVPLADLA CEEECCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHCCCCCCCCCEEEEEHHHHH QTLADLLPLHRRIVLVGSIAGLGDWDAVLSGAFAAGATGLMRSVALEFMSHGVTINLIAA HHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC PSDDPCHALQVAALASALLASDGVSGQAVPCDGGANLRMSRARPRAAPLREP CCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA