| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is trsA [H]
Identifier: 87199580
GI number: 87199580
Start: 1621111
End: 1622706
Strand: Direct
Name: trsA [H]
Synonym: Saro_1563
Alternate gene names: 87199580
Gene position: 1621111-1622706 (Clockwise)
Preceding gene: 87199579
Following gene: 87199581
Centisome position: 45.52
GC content: 65.85
Gene sequence:
>1596_bases ATGACTGCTGGCAACTGGAACTTCGGCGACCTGCTTGATATCGCCGCCGCCAATGTCCCGACGGACCGTCCCGCGCTCGT GCGGGGCGACCGGACGATCGCGTGGGGCGAATTCGATTGCCGCACCAACCGGCTCGCCCGCGCGATGCTGGCAAGTGGCC TGAAGACCGGAGACCGCGTGGCCATCCTCGCGCGCAACATTCCCGAATTTATCGAGATCGCCTGCGCCGCGTTCAAGGCG CGCCTGACCCACGTCAACATCAACTACCGCTACACCACCGCCGAAATCGAATATGTCCTTGCCGATTGCGGCGCGGCAGC GCTGTTCCATCAGGACGAATTTGCAGGCGTCGTCGAGCCCCTCCCTGCCGCGCTCGATCATCTGAGGCTCGTCGTGCAGA TCGGCGGGGAGGGCAGCTACGACCGGATGGTCGAAGAGGGCGACGGCACGCCGCTCGGCATCGCCCGGTCCCCCGAGGAC GGCTATCTCCTCTATACCGGCGGCACCACCGGGCGCCCCAAGGGCGTCATGTGGGCGGCAGGCGATGCACGCGCGGTACA GCTTGAGGCGCCAACGGTGCGCAATCCGGTGCTGACCCTGGAGGACCACGCGAAGCAGGTTGCGGCCAACATCACCCCGG GCCGCGTGCTTCCGGCCTGTCCGCTGATGCACGGGGCGGGGCTCAACAGTTCGATGGCGGAACTCCTGATGGGCGGCACT GCGGTGTTGCTGGAAAAGGACAGCTTTCGCGCCGACGATCTATGGGATCAGGTCGAGGGGCACCAGGTCACGCGCATCCT GATCGTCGGCGACGTTTTCGCCCGGCCGATGCTTCAGGCGCTCGAGGCTGAACCGGGTCGCTGGGACCTGTCATGTCTCA AGGTCATTTCCTCGGCCGGCCTGATGTGGAGCGAGGAAGTGAAGCGTGGCCTTGTCCGCCAACTTCCGCAGCTGACGCTG GTGGATATCCTCGGTGCGTCCGAGGCCTCGGGTTTCGGCTATGCCGTGACGACCGCCACGCGTGAGACACCTACCGGCTA TTTCGAGCCAGGTCGCCAGACCGTCATCATCGACGTCGACACCGACCGCGTGCTGGCCGACGACGAACCCGGCACAGGCT GGCTCGCCCGCCGCCCACCTTTCGCGCAAGGCTATTTCGGCGATCCGGAAAAGACCGCGCAGACCTATCGCACCATTGGC GGCATCACTTATGCCATCCCCGGCGACATGGCCGAACGTACTGTCGAGGGTCTCATTCGATTGATCGGTCGCGGCAATCT GTGCATCAATACCGGCGGCGAAAAGGTCTTCGTCGAGGAAGTCGAGGAAGCACTCAAGCGAGCCCCGGGCATCGAGGACG CCATCGTTGTCGGTGTGCCGGACGAGACTTGGGGCAAGGCCGTCGTCGCCCTGGTCCGCACTGGCGCGACCTACGACGAG GACGCCGCACGCACGGCGCTTGCAGCAGACCTTGCGCGCTACAAGCTGCCGCGCCGGATCATCGTCCTCGACGATCTTCC GCGCCATGCCAGCGGCAAGTCCGACTACCGCCGCGCGACCGAACTCGCCGTGGCCCACCTCGCCCTCGCGGCCTGA
Upstream 100 bases:
>100_bases GCAAAGCTTGCCACTTCCCAAGATGCGGCAGAGGCCGTGGCTGCTTTCGTGGAGAAGCGCCCCCCGGTTTTCCTCGGTCG CTGACGGGGAGCGCGCGACG
Downstream 100 bases:
>100_bases CCGGTGCGGCCCCACGCCCTTGTTACCGGCGGCGCGCAGGGCATCGGCCGCGCCGTGGCCGAACTGCTTGCCGGGCAGGG CTGGGATGTCACGGCCGCCG
Product: acyl-CoA synthetase
Products: NA
Alternate protein names: TrsI; AMP-binding ligase; Quinoxaline-2-carboxylic acid-activating enzyme [H]
Number of amino acids: Translated: 531; Mature: 530
Protein sequence:
>531_residues MTAGNWNFGDLLDIAAANVPTDRPALVRGDRTIAWGEFDCRTNRLARAMLASGLKTGDRVAILARNIPEFIEIACAAFKA RLTHVNINYRYTTAEIEYVLADCGAAALFHQDEFAGVVEPLPAALDHLRLVVQIGGEGSYDRMVEEGDGTPLGIARSPED GYLLYTGGTTGRPKGVMWAAGDARAVQLEAPTVRNPVLTLEDHAKQVAANITPGRVLPACPLMHGAGLNSSMAELLMGGT AVLLEKDSFRADDLWDQVEGHQVTRILIVGDVFARPMLQALEAEPGRWDLSCLKVISSAGLMWSEEVKRGLVRQLPQLTL VDILGASEASGFGYAVTTATRETPTGYFEPGRQTVIIDVDTDRVLADDEPGTGWLARRPPFAQGYFGDPEKTAQTYRTIG GITYAIPGDMAERTVEGLIRLIGRGNLCINTGGEKVFVEEVEEALKRAPGIEDAIVVGVPDETWGKAVVALVRTGATYDE DAARTALAADLARYKLPRRIIVLDDLPRHASGKSDYRRATELAVAHLALAA
Sequences:
>Translated_531_residues MTAGNWNFGDLLDIAAANVPTDRPALVRGDRTIAWGEFDCRTNRLARAMLASGLKTGDRVAILARNIPEFIEIACAAFKA RLTHVNINYRYTTAEIEYVLADCGAAALFHQDEFAGVVEPLPAALDHLRLVVQIGGEGSYDRMVEEGDGTPLGIARSPED GYLLYTGGTTGRPKGVMWAAGDARAVQLEAPTVRNPVLTLEDHAKQVAANITPGRVLPACPLMHGAGLNSSMAELLMGGT AVLLEKDSFRADDLWDQVEGHQVTRILIVGDVFARPMLQALEAEPGRWDLSCLKVISSAGLMWSEEVKRGLVRQLPQLTL VDILGASEASGFGYAVTTATRETPTGYFEPGRQTVIIDVDTDRVLADDEPGTGWLARRPPFAQGYFGDPEKTAQTYRTIG GITYAIPGDMAERTVEGLIRLIGRGNLCINTGGEKVFVEEVEEALKRAPGIEDAIVVGVPDETWGKAVVALVRTGATYDE DAARTALAADLARYKLPRRIIVLDDLPRHASGKSDYRRATELAVAHLALAA >Mature_530_residues TAGNWNFGDLLDIAAANVPTDRPALVRGDRTIAWGEFDCRTNRLARAMLASGLKTGDRVAILARNIPEFIEIACAAFKAR LTHVNINYRYTTAEIEYVLADCGAAALFHQDEFAGVVEPLPAALDHLRLVVQIGGEGSYDRMVEEGDGTPLGIARSPEDG YLLYTGGTTGRPKGVMWAAGDARAVQLEAPTVRNPVLTLEDHAKQVAANITPGRVLPACPLMHGAGLNSSMAELLMGGTA VLLEKDSFRADDLWDQVEGHQVTRILIVGDVFARPMLQALEAEPGRWDLSCLKVISSAGLMWSEEVKRGLVRQLPQLTLV DILGASEASGFGYAVTTATRETPTGYFEPGRQTVIIDVDTDRVLADDEPGTGWLARRPPFAQGYFGDPEKTAQTYRTIGG ITYAIPGDMAERTVEGLIRLIGRGNLCINTGGEKVFVEEVEEALKRAPGIEDAIVVGVPDETWGKAVVALVRTGATYDED AARTALAADLARYKLPRRIIVLDDLPRHASGKSDYRRATELAVAHLALAA
Specific function: Involved in triostin biosynthesis. Activates quinoxaline-2-carboxylic acid (QA) via catalysis of the ATP- pyrophosphate exchange reaction dependent on QA, and the formation of the corresponding adenylate. Also activates structural analogs of QA such as qu
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=560, Percent_Identity=22.6785714285714, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI187761345, Length=549, Percent_Identity=26.5938069216758, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI187761343, Length=549, Percent_Identity=26.5938069216758, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI28416953, Length=520, Percent_Identity=25.3846153846154, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI38505220, Length=489, Percent_Identity=23.1083844580777, Blast_Score=79, Evalue=8e-15, Organism=Escherichia coli, GI145693145, Length=535, Percent_Identity=28.785046728972, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1788107, Length=547, Percent_Identity=24.8628884826325, Blast_Score=109, Evalue=4e-25, Organism=Escherichia coli, GI1786810, Length=539, Percent_Identity=25.417439703154, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI221142682, Length=503, Percent_Identity=25.6461232604374, Blast_Score=92, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17557194, Length=511, Percent_Identity=24.4618395303327, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17560308, Length=566, Percent_Identity=23.321554770318, Blast_Score=99, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17538037, Length=507, Percent_Identity=24.0631163708087, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI32563687, Length=519, Percent_Identity=24.0847784200385, Blast_Score=90, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17531443, Length=514, Percent_Identity=21.4007782101167, Blast_Score=83, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17558820, Length=544, Percent_Identity=21.5073529411765, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17559526, Length=366, Percent_Identity=23.4972677595628, Blast_Score=70, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6319699, Length=509, Percent_Identity=24.5579567779961, Blast_Score=91, Evalue=7e-19, Organism=Saccharomyces cerevisiae, GI6323182, Length=556, Percent_Identity=23.021582733813, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6319264, Length=565, Percent_Identity=24.2477876106195, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24581924, Length=555, Percent_Identity=23.7837837837838, Blast_Score=81, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: NA
Molecular weight: Translated: 57257; Mature: 57126
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAGNWNFGDLLDIAAANVPTDRPALVRGDRTIAWGEFDCRTNRLARAMLASGLKTGDRV CCCCCCCCHHHHHHHHCCCCCCCCCEEECCCEEEECCCCHHHHHHHHHHHHHCCCCCCEE AILARNIPEFIEIACAAFKARLTHVNINYRYTTAEIEYVLADCGAAALFHQDEFAGVVEP EEEECCCHHHHHHHHHHHHHEEEEEEEEEEEEHHEEEEEECCCCHHHEECCHHHHHHHHH LPAALDHLRLVVQIGGEGSYDRMVEEGDGTPLGIARSPEDGYLLYTGGTTGRPKGVMWAA HHHHHHHEEEEEEECCCCCHHHHHHCCCCCEECEEECCCCCEEEEECCCCCCCCCEEEEC GDARAVQLEAPTVRNPVLTLEDHAKQVAANITPGRVLPACPLMHGAGLNSSMAELLMGGT CCCEEEEEECCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCE AVLLEKDSFRADDLWDQVEGHQVTRILIVGDVFARPMLQALEAEPGRWDLSCLKVISSAG EEEEECCCCCCHHHHHHCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC LMWSEEVKRGLVRQLPQLTLVDILGASEASGFGYAVTTATRETPTGYFEPGRQTVIIDVD CEEHHHHHHHHHHHCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEC TDRVLADDEPGTGWLARRPPFAQGYFGDPEKTAQTYRTIGGITYAIPGDMAERTVEGLIR CCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHH LIGRGNLCINTGGEKVFVEEVEEALKRAPGIEDAIVVGVPDETWGKAVVALVRTGATYDE HHCCCCEEEECCCCEEEHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCH DAARTALAADLARYKLPRRIIVLDDLPRHASGKSDYRRATELAVAHLALAA HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TAGNWNFGDLLDIAAANVPTDRPALVRGDRTIAWGEFDCRTNRLARAMLASGLKTGDRV CCCCCCCHHHHHHHHCCCCCCCCCEEECCCEEEECCCCHHHHHHHHHHHHHCCCCCCEE AILARNIPEFIEIACAAFKARLTHVNINYRYTTAEIEYVLADCGAAALFHQDEFAGVVEP EEEECCCHHHHHHHHHHHHHEEEEEEEEEEEEHHEEEEEECCCCHHHEECCHHHHHHHHH LPAALDHLRLVVQIGGEGSYDRMVEEGDGTPLGIARSPEDGYLLYTGGTTGRPKGVMWAA HHHHHHHEEEEEEECCCCCHHHHHHCCCCCEECEEECCCCCEEEEECCCCCCCCCEEEEC GDARAVQLEAPTVRNPVLTLEDHAKQVAANITPGRVLPACPLMHGAGLNSSMAELLMGGT CCCEEEEEECCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCE AVLLEKDSFRADDLWDQVEGHQVTRILIVGDVFARPMLQALEAEPGRWDLSCLKVISSAG EEEEECCCCCCHHHHHHCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC LMWSEEVKRGLVRQLPQLTLVDILGASEASGFGYAVTTATRETPTGYFEPGRQTVIIDVD CEEHHHHHHHHHHHCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEC TDRVLADDEPGTGWLARRPPFAQGYFGDPEKTAQTYRTIGGITYAIPGDMAERTVEGLIR CCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHH LIGRGNLCINTGGEKVFVEEVEEALKRAPGIEDAIVVGVPDETWGKAVVALVRTGATYDE HHCCCCEEEECCCCEEEHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCH DAARTALAADLARYKLPRRIIVLDDLPRHASGKSDYRRATELAVAHLALAA HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA