Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is 87199485

Identifier: 87199485

GI number: 87199485

Start: 1506059

End: 1506508

Strand: Reverse

Name: 87199485

Synonym: Saro_1465

Alternate gene names: NA

Gene position: 1506508-1506059 (Counterclockwise)

Preceding gene: 87199488

Following gene: 87199484

Centisome position: 42.3

GC content: 58.89

Gene sequence:

>450_bases
ATGACCGACACCAACCTGGTCGAGATGCGCGCGATCGAGCGCATGATGTTCGACTATTCCTACCATCTCGACATGAACCA
TCCCGAGGAACTCGCCGCCCTCTTCGTCGAGGACTGCGAAGTAAGTTATGCGCCCAATTTCGGCGCGACCGGCAGGGACG
CCTACAAGAAGACCCTTGAAGGCATCGGCACCTTCTTCCGTGGCACCTCGCACCACAACTCCAATATCTGCATCGACTTC
GTCAGCGAGACCGAAGCCAATGTCCGCTCGGTGGTGCTCGCCATCCATCGCTACACCAAGGAACGTCCCGACGGCATCCT
CTACGGGCAATACTTCGACACAGTGGTCAAGGTCGATGGCCAGTGGAAGTTCAAGCGCCGCGAGCTGCGTACTACGATGA
CCACCGACTATCACGTGCGCGCTGCCAACCCCATCGGTCGCGCCGAATGA

Upstream 100 bases:

>100_bases
TCGCACCCTAGCTTCCCTCACCTTTCCCATTCCGCCTGACCCCGTTGACAGCGCCGCTCCGGCGGACAATTGTCAACATA
ATCGTTGATTGGAGCACCTA

Downstream 100 bases:

>100_bases
GCGGAGACGAGCCCGGCCCGGAACTCCTGATCGAGCATTCCGGTTCGATCAGCTGGATCGTGCTCAACCGCCCGGCCCAG
GCCAACGCGCTGTCGCGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MTDTNLVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDF
VSETEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRRELRTTMTTDYHVRAANPIGRAE

Sequences:

>Translated_149_residues
MTDTNLVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDF
VSETEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRRELRTTMTTDYHVRAANPIGRAE
>Mature_148_residues
TDTNLVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFV
SETEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRRELRTTMTTDYHVRAANPIGRAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17211; Mature: 17079

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTNLVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNFGATGRDAYKKTLE
CCCCHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHH
GIGTFFRGTSHHNSNICIDFVSETEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDG
HHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHCEEEEECC
QWKFKRRELRTTMTTDYHVRAANPIGRAE
CEEHHHHHHHHHCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
TDTNLVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNFGATGRDAYKKTLE
CCCHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHH
GIGTFFRGTSHHNSNICIDFVSETEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDG
HHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHCEEEEECC
QWKFKRRELRTTMTTDYHVRAANPIGRAE
CEEHHHHHHHHHCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA