| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199485
Identifier: 87199485
GI number: 87199485
Start: 1506059
End: 1506508
Strand: Reverse
Name: 87199485
Synonym: Saro_1465
Alternate gene names: NA
Gene position: 1506508-1506059 (Counterclockwise)
Preceding gene: 87199488
Following gene: 87199484
Centisome position: 42.3
GC content: 58.89
Gene sequence:
>450_bases ATGACCGACACCAACCTGGTCGAGATGCGCGCGATCGAGCGCATGATGTTCGACTATTCCTACCATCTCGACATGAACCA TCCCGAGGAACTCGCCGCCCTCTTCGTCGAGGACTGCGAAGTAAGTTATGCGCCCAATTTCGGCGCGACCGGCAGGGACG CCTACAAGAAGACCCTTGAAGGCATCGGCACCTTCTTCCGTGGCACCTCGCACCACAACTCCAATATCTGCATCGACTTC GTCAGCGAGACCGAAGCCAATGTCCGCTCGGTGGTGCTCGCCATCCATCGCTACACCAAGGAACGTCCCGACGGCATCCT CTACGGGCAATACTTCGACACAGTGGTCAAGGTCGATGGCCAGTGGAAGTTCAAGCGCCGCGAGCTGCGTACTACGATGA CCACCGACTATCACGTGCGCGCTGCCAACCCCATCGGTCGCGCCGAATGA
Upstream 100 bases:
>100_bases TCGCACCCTAGCTTCCCTCACCTTTCCCATTCCGCCTGACCCCGTTGACAGCGCCGCTCCGGCGGACAATTGTCAACATA ATCGTTGATTGGAGCACCTA
Downstream 100 bases:
>100_bases GCGGAGACGAGCCCGGCCCGGAACTCCTGATCGAGCATTCCGGTTCGATCAGCTGGATCGTGCTCAACCGCCCGGCCCAG GCCAACGCGCTGTCGCGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MTDTNLVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDF VSETEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRRELRTTMTTDYHVRAANPIGRAE
Sequences:
>Translated_149_residues MTDTNLVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDF VSETEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRRELRTTMTTDYHVRAANPIGRAE >Mature_148_residues TDTNLVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFV SETEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRRELRTTMTTDYHVRAANPIGRAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17211; Mature: 17079
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTNLVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNFGATGRDAYKKTLE CCCCHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHH GIGTFFRGTSHHNSNICIDFVSETEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDG HHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHCEEEEECC QWKFKRRELRTTMTTDYHVRAANPIGRAE CEEHHHHHHHHHCCCCEEEEECCCCCCCC >Mature Secondary Structure TDTNLVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNFGATGRDAYKKTLE CCCHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHH GIGTFFRGTSHHNSNICIDFVSETEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDG HHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHCEEEEECC QWKFKRRELRTTMTTDYHVRAANPIGRAE CEEHHHHHHHHHCCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA