Click here to switch to the map view.

The map label for this gene is 87199480

Identifier: 87199480

GI number: 87199480

Start: 1502832

End: 1503332

Strand: Direct

Name: 87199480

Synonym: Saro_1460

Alternate gene names: NA

Gene position: 1502832-1503332 (Clockwise)

Preceding gene: 87199479

Following gene: 87199486

Centisome position: 42.2

GC content: 60.68

Gene sequence:

>501_bases
GTGGCAGTCGCTTGTGGCCTGAGGTTTCAATGCTGTAGCGGCAGCTCCGCCAAGCGGAGACGAGTTCGCATTGGACTGAC
AGCACCCTGGCGTGCGGTCGACCACGAGGGTGAGGTGCTGGAGAGTTTTGTCACCAGAAAACGGGACAAAACCGCGGCTT
TGACCTTCATGAAGAAGGCGTTGAAGCGGCATGGAAAGGCCGAGGCCATCGTCACCGACGGGCTGCGTTCTTACCCTGCG
GCGATGCGGGAACTGGGCAATGAGGGGCGACGCGAAGTTGGCCGGCACCTCAACAATCGCGCGGAAAATTCACACCTGCC
GTTCCGACGAAGAGAGAGGGCGATGCTGCGGTTTCGGCAGATGAAGTCGCTGCAGAAATTCGCCTCGGTCCATGCCTCCA
TCCACAACCACTTTTCCCAGGAACGCCACCTCGTCGACCGACTAACCTTCAAGGTTCGCCGCTCGGCCGCGCTGGTCGAG
TGGCAGTCGCTTGTGGCCTGA

Upstream 100 bases:

>100_bases
TCGCCTCGGTCCATGCCTCCATCCACAACCACTTTTCCCAGGAACGCCACCTCGTCGACCGACTAACCTTCAAGGTTCGC
CGCTCGGCCGCGCTGGTCGA

Downstream 100 bases:

>100_bases
GGTTTCAATGCTGTAGCGGCAGCTCCGCCAAGCGGAGACGAGTTCGCATTGGACTGACAGCACCGACCAGGTTGTCAGCC
CTTGCGCGGAAAATCGCTCG

Product: transposase

Products: NA

Alternate protein names: IS6 Family Transposase; Integrase Core Domain Protein; Integrase Catalytic Region; Integrase Catalytic Subunit; ISHne6 Transposase; Transposase Protein; Transposase-Related Protein; IS Element Transposase

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MAVACGLRFQCCSGSSAKRRRVRIGLTAPWRAVDHEGEVLESFVTRKRDKTAALTFMKKALKRHGKAEAIVTDGLRSYPA
AMRELGNEGRREVGRHLNNRAENSHLPFRRRERAMLRFRQMKSLQKFASVHASIHNHFSQERHLVDRLTFKVRRSAALVE
WQSLVA

Sequences:

>Translated_166_residues
MAVACGLRFQCCSGSSAKRRRVRIGLTAPWRAVDHEGEVLESFVTRKRDKTAALTFMKKALKRHGKAEAIVTDGLRSYPA
AMRELGNEGRREVGRHLNNRAENSHLPFRRRERAMLRFRQMKSLQKFASVHASIHNHFSQERHLVDRLTFKVRRSAALVE
WQSLVA
>Mature_165_residues
AVACGLRFQCCSGSSAKRRRVRIGLTAPWRAVDHEGEVLESFVTRKRDKTAALTFMKKALKRHGKAEAIVTDGLRSYPAA
MRELGNEGRREVGRHLNNRAENSHLPFRRRERAMLRFRQMKSLQKFASVHASIHNHFSQERHLVDRLTFKVRRSAALVEW
QSLVA

Specific function: Unknown

COG id: COG3316

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19105; Mature: 18974

Theoretical pI: Translated: 11.97; Mature: 11.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVACGLRFQCCSGSSAKRRRVRIGLTAPWRAVDHEGEVLESFVTRKRDKTAALTFMKKA
CCEECCCEEEECCCCCHHHHEEEECCCCCCHHCCCHHHHHHHHHHHCCCHHHHHHHHHHH
LKRHGKAEAIVTDGLRSYPAAMRELGNEGRREVGRHLNNRAENSHLPFRRRERAMLRFRQ
HHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
MKSLQKFASVHASIHNHFSQERHLVDRLTFKVRRSAALVEWQSLVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVACGLRFQCCSGSSAKRRRVRIGLTAPWRAVDHEGEVLESFVTRKRDKTAALTFMKKA
CEECCCEEEECCCCCHHHHEEEECCCCCCHHCCCHHHHHHHHHHHCCCHHHHHHHHHHH
LKRHGKAEAIVTDGLRSYPAAMRELGNEGRREVGRHLNNRAENSHLPFRRRERAMLRFRQ
HHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
MKSLQKFASVHASIHNHFSQERHLVDRLTFKVRRSAALVEWQSLVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA