| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is outK [H]
Identifier: 87199407
GI number: 87199407
Start: 1430763
End: 1431749
Strand: Direct
Name: outK [H]
Synonym: Saro_1386
Alternate gene names: 87199407
Gene position: 1430763-1431749 (Clockwise)
Preceding gene: 87199406
Following gene: 87199408
Centisome position: 40.17
GC content: 67.58
Gene sequence:
>987_bases GTGAGCGCAGGGGACCCGAAGGAGCGCGGTGCGGCACTGCTGTCCGTGTTGCTGCTGGTTGCGGTCATGGCGGTGATCGC GGCGGTTATGCTCGACCGGCTCAACCTTGCTGCGCGGCTTGCGGGCAACGGTCAGGCGATGACTCAGGCGCGGCTTTACG CGACAAGCGCCGAAACGCTCGCGATGGCGCAGATCAAGGGGATGGTCGACAGCTCGCAGGAGCGGACGGTGGACCGGCAA GGGCTGCTTGGCCGCGACTTCCCGCTGCCTCTGCCGCGCGGTACGGCGATGGCGCGGGTGGAGGACGCGGGTAACTGCTT CAACCTGAACTCGCTGGTCGAGGCCGATGCGCAAGGCGTTCTTGAGCTGCGGCTCGTCGGCCTCAACCAGATGCGCGCGC TCATGACCGGCCTCGCCATTCCCGAAGCGGAAAGTGCGATCATCAGCGATTCGATCGCCGACTGGATCGACACCGACAAC CGGCCCGCCCCCAACGGTGCGGAGGACGAGACCTACCAGGGTACGGCAACGCCCTATCGCACGGCCGGGCGGCTGATTGG CGACGTCAGCGAGATCCGCGCTGTGCGGGGAATGACGCCGCAATTCTACGAACGCCTGCGCCCCTGGCTCTGCGCGCTCC CGGCGGCGGAGCTTTCACCGATCGACGTGAACACCCTTCGGCCCGATCAGGCGCCGCTTCTAGCCATGCTCGCGCCCAAG GCCATCCCGGTCGATCGCGCCCGCGCCATGCTGTCCGGGCGGCCCGCGCTTGGCTGGGCAAGCGGTGACGAAGCCTTGCG CGGTTTCGGCGGAGAGGGAGCCGGGGGCGTACCGCTCAACCAGTTGCAGGTGCGCAGCCGCTGGTTCCTGTTGACGCTGA TGGTCACGGTCGATTCGGCGGTGGTCGAGGAGCAGGCGTTGATCGACGTCGGCGACAACCCTCCAAAAGTCGCCTTCCGT ACCTGGGGCGACCGTTTCAGCCGTTAG
Upstream 100 bases:
>100_bases CCCAGCTCCAGACCGAGCTTCCGGTGGCGGTCGAACTGCTCCTGCCCCAGGCCGGGGTGCCGCCGCTGCGCATCGTGTCT CTGGTCGGGGTGAACTACCA
Downstream 100 bases:
>100_bases TGCGCGTCCAAATCGCGCCGATCTTGCTCCTCGCGCAAAATTCCGCTTCCCTTTGCCGCGCCTTTCTGCAAAGGGGCCAG CCCGCGCAGCAGAGACTTGC
Product: general secretion pathway protein K
Products: NA
Alternate protein names: Pectic enzymes secretion protein OUTK [H]
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MSAGDPKERGAALLSVLLLVAVMAVIAAVMLDRLNLAARLAGNGQAMTQARLYATSAETLAMAQIKGMVDSSQERTVDRQ GLLGRDFPLPLPRGTAMARVEDAGNCFNLNSLVEADAQGVLELRLVGLNQMRALMTGLAIPEAESAIISDSIADWIDTDN RPAPNGAEDETYQGTATPYRTAGRLIGDVSEIRAVRGMTPQFYERLRPWLCALPAAELSPIDVNTLRPDQAPLLAMLAPK AIPVDRARAMLSGRPALGWASGDEALRGFGGEGAGGVPLNQLQVRSRWFLLTLMVTVDSAVVEEQALIDVGDNPPKVAFR TWGDRFSR
Sequences:
>Translated_328_residues MSAGDPKERGAALLSVLLLVAVMAVIAAVMLDRLNLAARLAGNGQAMTQARLYATSAETLAMAQIKGMVDSSQERTVDRQ GLLGRDFPLPLPRGTAMARVEDAGNCFNLNSLVEADAQGVLELRLVGLNQMRALMTGLAIPEAESAIISDSIADWIDTDN RPAPNGAEDETYQGTATPYRTAGRLIGDVSEIRAVRGMTPQFYERLRPWLCALPAAELSPIDVNTLRPDQAPLLAMLAPK AIPVDRARAMLSGRPALGWASGDEALRGFGGEGAGGVPLNQLQVRSRWFLLTLMVTVDSAVVEEQALIDVGDNPPKVAFR TWGDRFSR >Mature_327_residues SAGDPKERGAALLSVLLLVAVMAVIAAVMLDRLNLAARLAGNGQAMTQARLYATSAETLAMAQIKGMVDSSQERTVDRQG LLGRDFPLPLPRGTAMARVEDAGNCFNLNSLVEADAQGVLELRLVGLNQMRALMTGLAIPEAESAIISDSIADWIDTDNR PAPNGAEDETYQGTATPYRTAGRLIGDVSEIRAVRGMTPQFYERLRPWLCALPAAELSPIDVNTLRPDQAPLLAMLAPKA IPVDRARAMLSGRPALGWASGDEALRGFGGEGAGGVPLNQLQVRSRWFLLTLMVTVDSAVVEEQALIDVGDNPPKVAFRT WGDRFSR
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of the multiple pectic enzymes [H]
COG id: COG3156
COG function: function code U; Type II secretory pathway, component PulK
Gene ontology:
Cell location: Cell inner membrane (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP K family [H]
Homologues:
Organism=Escherichia coli, GI1789729, Length=256, Percent_Identity=31.640625, Blast_Score=107, Evalue=9e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005628 [H]
Pfam domain/function: PF03934 GspK [H]
EC number: NA
Molecular weight: Translated: 35132; Mature: 35001
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAGDPKERGAALLSVLLLVAVMAVIAAVMLDRLNLAARLAGNGQAMTQARLYATSAETL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHH AMAQIKGMVDSSQERTVDRQGLLGRDFPLPLPRGTAMARVEDAGNCFNLNSLVEADAQGV HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHEEECCCCCEECHHHHHHHHHCCE LELRLVGLNQMRALMTGLAIPEAESAIISDSIADWIDTDNRPAPNGAEDETYQGTATPYR EEHEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH TAGRLIGDVSEIRAVRGMTPQFYERLRPWLCALPAAELSPIDVNTLRPDQAPLLAMLAPK HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC AIPVDRARAMLSGRPALGWASGDEALRGFGGEGAGGVPLNQLQVRSRWFLLTLMVTVDSA CCCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VVEEQALIDVGDNPPKVAFRTWGDRFSR HHHHHHEEECCCCCCCCHHCCCHHHCCC >Mature Secondary Structure SAGDPKERGAALLSVLLLVAVMAVIAAVMLDRLNLAARLAGNGQAMTQARLYATSAETL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHH AMAQIKGMVDSSQERTVDRQGLLGRDFPLPLPRGTAMARVEDAGNCFNLNSLVEADAQGV HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHEEECCCCCEECHHHHHHHHHCCE LELRLVGLNQMRALMTGLAIPEAESAIISDSIADWIDTDNRPAPNGAEDETYQGTATPYR EEHEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH TAGRLIGDVSEIRAVRGMTPQFYERLRPWLCALPAAELSPIDVNTLRPDQAPLLAMLAPK HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC AIPVDRARAMLSGRPALGWASGDEALRGFGGEGAGGVPLNQLQVRSRWFLLTLMVTVDSA CCCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VVEEQALIDVGDNPPKVAFRTWGDRFSR HHHHHHEEECCCCCCCCHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8326859 [H]