| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199381
Identifier: 87199381
GI number: 87199381
Start: 1407116
End: 1408150
Strand: Reverse
Name: 87199381
Synonym: Saro_1360
Alternate gene names: NA
Gene position: 1408150-1407116 (Counterclockwise)
Preceding gene: 87199384
Following gene: 87199373
Centisome position: 39.54
GC content: 65.02
Gene sequence:
>1035_bases ATGTTGCGAACACGGACAACCTTGATCGTCGGCGCCGGGGCCAGTGCCGAACTGCAGTTTCCCACCAATGCGGAACTCCT GGCCCGGATCATCCAGGGCTACGATTTCAAGCGCACTGCCTCAGACACGTCCACCCGCGACGGACAACTCCTGCTCCGCA ACGTCTACAAGCTGGCCGAACGCGCCGGAAAGCCGGTGGAAGAGGTCGCCGTCGCGGCCGAACGCCTGCGCAACGCCTGC CGCCTCGGCCGCTCGGTCGACACGGTGCTGGAACAGTACGATCACGATCCGCTGGTGGTCGCCTGCGGGAAGCTCGCGGT CACCTATTTCATCGGCCAGGCGGAGGCGCGTTCCAGCCTGCGCGAGGCCCCGCGCCTCGAAGGCGAACTCCCCCTGCAGG GCAAGGTCGCGGAATACTGGCTGTACCAGCTTGGCCAGATGCTGACCTCGGGCGTCCCGCGCAGCCGCATCGGCCAGGTG CTGGAACAGCTCACCATCGTCAACTTCAACTACGACCGCTCGGTCGAACACTTCCTGCCTTACGCGCTGGTCATGGCCTA CGGCATCGATCTAAAGGAAGCGCAGGGCGTCATCGCCGAAAAGCTGCACGTGATCCATCCACACGGCGCCATCGGCAGGC TGCCGTGGCAGCGCGGCGACGCCCCGCAGGCGGAATGGGGCGCCGAGCAGCCCTGGAACATCCACGCGATCGCGGCGCAA CTGAAGTCGCTCAACGAGCGCAGTACCGAAAAGGCCGCCGTGCGCGAGATCCGCGTGGCAGTTGCCGCCGCAAAGCGCCT GGTGTTCCTCGGCTTCGGCTTCCAGCCGCAGAACGTCGACCTCCTGTTCGAGAACACGCTGTCGCACAATCCCGAAGTGC TGGTCTCCACTTATGGAATGAGCGCGGGCAACGCCGCCACCGTCGCGCAGATGATCCGGCGGCTGGCAGGGCTCGAATCC GAAGACCTGCTGATGATGTCGCCCAACAAGGCCTGGGAAGTCCTGCGCGATTACTCGCTTCTGCTGGAAAGCTGA
Upstream 100 bases:
>100_bases AATGAACTTAGCGTAAACGGTATGTTAGGTATGATCCCCGCATGGCGTTCGGCACGAAGGTCGCGTGCGTCGCGGCAGAC TGCGGGGATCGCCAAAGGGA
Downstream 100 bases:
>100_bases ACGCGTTCAGCCGCCGGTCGGCAGAGGCTGCACCACAGGTTCGGAAATGAAGACCGGCGCTGGCGTGGCGGCAGTCTGCG GCGCGGCTTCCGGGGGCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 344; Mature: 344
Protein sequence:
>344_residues MLRTRTTLIVGAGASAELQFPTNAELLARIIQGYDFKRTASDTSTRDGQLLLRNVYKLAERAGKPVEEVAVAAERLRNAC RLGRSVDTVLEQYDHDPLVVACGKLAVTYFIGQAEARSSLREAPRLEGELPLQGKVAEYWLYQLGQMLTSGVPRSRIGQV LEQLTIVNFNYDRSVEHFLPYALVMAYGIDLKEAQGVIAEKLHVIHPHGAIGRLPWQRGDAPQAEWGAEQPWNIHAIAAQ LKSLNERSTEKAAVREIRVAVAAAKRLVFLGFGFQPQNVDLLFENTLSHNPEVLVSTYGMSAGNAATVAQMIRRLAGLES EDLLMMSPNKAWEVLRDYSLLLES
Sequences:
>Translated_344_residues MLRTRTTLIVGAGASAELQFPTNAELLARIIQGYDFKRTASDTSTRDGQLLLRNVYKLAERAGKPVEEVAVAAERLRNAC RLGRSVDTVLEQYDHDPLVVACGKLAVTYFIGQAEARSSLREAPRLEGELPLQGKVAEYWLYQLGQMLTSGVPRSRIGQV LEQLTIVNFNYDRSVEHFLPYALVMAYGIDLKEAQGVIAEKLHVIHPHGAIGRLPWQRGDAPQAEWGAEQPWNIHAIAAQ LKSLNERSTEKAAVREIRVAVAAAKRLVFLGFGFQPQNVDLLFENTLSHNPEVLVSTYGMSAGNAATVAQMIRRLAGLES EDLLMMSPNKAWEVLRDYSLLLES >Mature_344_residues MLRTRTTLIVGAGASAELQFPTNAELLARIIQGYDFKRTASDTSTRDGQLLLRNVYKLAERAGKPVEEVAVAAERLRNAC RLGRSVDTVLEQYDHDPLVVACGKLAVTYFIGQAEARSSLREAPRLEGELPLQGKVAEYWLYQLGQMLTSGVPRSRIGQV LEQLTIVNFNYDRSVEHFLPYALVMAYGIDLKEAQGVIAEKLHVIHPHGAIGRLPWQRGDAPQAEWGAEQPWNIHAIAAQ LKSLNERSTEKAAVREIRVAVAAAKRLVFLGFGFQPQNVDLLFENTLSHNPEVLVSTYGMSAGNAATVAQMIRRLAGLES EDLLMMSPNKAWEVLRDYSLLLES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38134; Mature: 38134
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRTRTTLIVGAGASAELQFPTNAELLARIIQGYDFKRTASDTSTRDGQLLLRNVYKLAE CCCCEEEEEEECCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH RAGKPVEEVAVAAERLRNACRLGRSVDTVLEQYDHDPLVVACGKLAVTYFIGQAEARSSL HHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHCCHHHHHHH REAPRLEGELPLQGKVAEYWLYQLGQMLTSGVPRSRIGQVLEQLTIVNFNYDRSVEHFLP HHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEECCCCCCHHHHHH YALVMAYGIDLKEAQGVIAEKLHVIHPHGAIGRLPWQRGDAPQAEWGAEQPWNIHAIAAQ HHHHHHHCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LKSLNERSTEKAAVREIRVAVAAAKRLVFLGFGFQPQNVDLLFENTLSHNPEVLVSTYGM HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEECCCCCCCCEEEEECCC SAGNAATVAQMIRRLAGLESEDLLMMSPNKAWEVLRDYSLLLES CCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCC >Mature Secondary Structure MLRTRTTLIVGAGASAELQFPTNAELLARIIQGYDFKRTASDTSTRDGQLLLRNVYKLAE CCCCEEEEEEECCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH RAGKPVEEVAVAAERLRNACRLGRSVDTVLEQYDHDPLVVACGKLAVTYFIGQAEARSSL HHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHCCHHHHHHH REAPRLEGELPLQGKVAEYWLYQLGQMLTSGVPRSRIGQVLEQLTIVNFNYDRSVEHFLP HHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEECCCCCCHHHHHH YALVMAYGIDLKEAQGVIAEKLHVIHPHGAIGRLPWQRGDAPQAEWGAEQPWNIHAIAAQ HHHHHHHCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LKSLNERSTEKAAVREIRVAVAAAKRLVFLGFGFQPQNVDLLFENTLSHNPEVLVSTYGM HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEECCCCCCCCEEEEECCC SAGNAATVAQMIRRLAGLESEDLLMMSPNKAWEVLRDYSLLLES CCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA