| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is lon [H]
Identifier: 87199382
GI number: 87199382
Start: 1408377
End: 1410788
Strand: Direct
Name: lon [H]
Synonym: Saro_1361
Alternate gene names: 87199382
Gene position: 1408377-1410788 (Clockwise)
Preceding gene: 87199380
Following gene: 87199383
Centisome position: 39.54
GC content: 63.93
Gene sequence:
>2412_bases GTGCCCATGAATCTCTATCCTCTGCTTCCCCTTCGCGACATCGTCGTGTTCCCCGGCATGGTCGTGCCTCTGTTCGTGGG GCGCGAGAAATCGGTGGCTGCGCTCGAGGCGGCGATGTCCGGCGACAAGGATATCTTCCTGCTCGCGCAGCTCGATCCAG GTTGCGACGACCCGGACCGCGACGATCTTTACGATACCGGCGTGATTGCCAGCGTCCTGCAATTGCTAAAGCTGCCCGAC GGCACCGTGCGCGTGCTCGTGGAAGGGCGCGAGCGTGCGATGCTGGAAGGTCTGCGCGAGGAAACCACCGCGCAGGGCGC GATGCTGATTGCCCAGGTCGAGCCGATCGAGCCGGTGGTATCGCAAGGCACCGAAATTTCGGCGATGATGCGTTCGGTCG TCGATCAATTCGCCGAGTACGCCAAGCTTTCCAAGAAGCTGCCGCAGGATGCGGGTGGTCAGCTCGGTGATATCGAGGAC GCTGGCAAGCTGGCGGATTCGGTCGCGGCGAACCTTGCCGCGAAGGTCGCCGACAAGCAGGCGGTGCTTTCCGAAAACGA CCCCATGAAGCGGCTCGAGATGGTGCTTTCCTTCATGGAAGGCGAGCTTGGTGTGCTGCAGGTGGAGCGCAAGATCCGTG GCCGCGTGAAGCGTCAGATGGAGAAGACGCAGCGCGAGTACTACCTGAACGAGCAACTCAAGGCGATCCAGTCGGAGCTG GGCGGCGGCGACGGTGAGGAAGCCAACGAGATCGCCGAACTGCAGGAGAAGATCGACAAGCTCAAGCTGTCGAAGGAAGC GCGCGCCAAGGCGACGGCTGAGCTGAAGAAGCTCAAGACCATGCAGCCGATGAGCGCGGAGGCGACCGTCATCCGCAATT ACCTCGACGTGCTGCTGGGCTTGCCGTGGGGCAAGCGCAGCAAGCTCAAGAAGGACATCCCGGCGGCGCAGGCCGTGCTC GATGCCGATCACTATGCGCTCGACAAGGTCAAGGACCGGATCGTCGAGTACCTGGCGGTGCAGGCCCGCACGAACAAGCT CAAGGGGCCGATCCTGTGCCTCGTCGGCCCTCCGGGCGTCGGCAAGACCAGCCTTGGCAAGTCCATCGCCAAGGCTACGG GGCGCCAATTCGTGCGCCAGTCTCTGGGCGGCGTGCGTGACGAGGCCGAGATCCGCGGGCATCGCCGCACCTACATCGGC TCGCTGCCGGGCAAGATCGTGACCAACCTCAAGAAGGCGGGTACGGCCAATCCCTTGTTCCTGCTGGATGAGATCGACAA GTTGGGCCAGGACTTCCGCGGCGATCCGGCTTCGGCACTGCTCGAGGTGCTGGACCCGGAACAGAACGCCAAGTTCCAGG ACCATTACCTGGAGCTGGACATCGACCTGTCCGACGTGATGTTCGTGTGCACCGCGAACAGCCTCAACCTGCCTCAGCCT TTGCTTGACCGCATGGAGATCATCCGGCTCGAGGGCTATACCGAGGACGAGAAGGTCGAAATCGCCGAGCGTCATCTGGT GCGCAAGCAGGTGGAGGCACATGGCCTCAAGAAGGGTGAGTTCACCTTGACCCAGGAAGGCCTGCGCGATCTGATCCGCT ATTACACCCGCGAGGCGGGCGTGCGTACGCTGGAGCGCGAGATCGCGCGGCTGGCGCGCAAGTCGCTGCGTCAGATTCTC GAGGGCAAGACCAAGAGCGTGACGATCACGTCGGACAACCTTTCCGACTTCGCCGGGGTCCGCAAGTTCCGGCATGGCGT TTCGGACGAGGAGAACCAGGTCGGCGCGGTCACGGGTCTCGCCTGGACGGAAGTCGGCGGCGAACTGCTGACGATCGAGA GCGTGACGGTGCCCGGCAAGGGCGCGGTCAAGACCACCGGCAAGCTGGGCGAGGTAATGAGCGAGAGCGTCCAGATGGCG TTCAGCTTCGTCAAGGCGCGCAGCCCTGCCTACGGCATCAAGCCTTCGATCTTCAATCGCAAGGACCTGCATATCCACCT GCCCGAAGGCGCGGTGCCCAAGGACGGACCAAGCGCCGGCATCGGCATGGTCACGGCAATGGTCTCGACGCTGACGGGCA TTCCGGTGCGGGCGGACGTGGCCATGACCGGCGAAGTCACCTTGCGCGGTCGCGTGCTGGCGATCGGTGGCCTCAAGGAA AAGCTGCTGGCCGCGCTGCGCGGCGGCATCAAGACGGTGTTGATCCCGGAAGAGAACCGCAAGGACCTTGCCGAGATTCC GACCAACATCAAGGAAGGTCTCGAGATCGTGCCTGTGAGCCACGTGGACGAAGTGCTGGCGCGGGCGCTGGTCACGACGC CCGAGGCGATCGAGTGGACTGAAGCGGACGATCTGGCGACCCAGCCCGCCCCTACGGTCGCTGGCCCTGCGACCTCGCCG ACGGCCCACTGA
Upstream 100 bases:
>100_bases GATCCACAAGCGAAGTCGCCAAGGCCATTGCGGCAAGGACAGGGGACCCCCATATCCGGGTCAAAGCGTCGGGCGGCGTG CCCGACAGGACGGAAACGAA
Downstream 100 bases:
>100_bases AAGGTTGATCGAGGGCCGCCTCGCGCAACGAAATTGCGCGGGGTGGCCCTCAGCTCGCCAAAGCCCCGAATTGTCGGGAA TATTCCCGATTGTTCGTCGC
Product: Lon-A peptidase
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 803; Mature: 802
Protein sequence:
>803_residues MPMNLYPLLPLRDIVVFPGMVVPLFVGREKSVAALEAAMSGDKDIFLLAQLDPGCDDPDRDDLYDTGVIASVLQLLKLPD GTVRVLVEGRERAMLEGLREETTAQGAMLIAQVEPIEPVVSQGTEISAMMRSVVDQFAEYAKLSKKLPQDAGGQLGDIED AGKLADSVAANLAAKVADKQAVLSENDPMKRLEMVLSFMEGELGVLQVERKIRGRVKRQMEKTQREYYLNEQLKAIQSEL GGGDGEEANEIAELQEKIDKLKLSKEARAKATAELKKLKTMQPMSAEATVIRNYLDVLLGLPWGKRSKLKKDIPAAQAVL DADHYALDKVKDRIVEYLAVQARTNKLKGPILCLVGPPGVGKTSLGKSIAKATGRQFVRQSLGGVRDEAEIRGHRRTYIG SLPGKIVTNLKKAGTANPLFLLDEIDKLGQDFRGDPASALLEVLDPEQNAKFQDHYLELDIDLSDVMFVCTANSLNLPQP LLDRMEIIRLEGYTEDEKVEIAERHLVRKQVEAHGLKKGEFTLTQEGLRDLIRYYTREAGVRTLEREIARLARKSLRQIL EGKTKSVTITSDNLSDFAGVRKFRHGVSDEENQVGAVTGLAWTEVGGELLTIESVTVPGKGAVKTTGKLGEVMSESVQMA FSFVKARSPAYGIKPSIFNRKDLHIHLPEGAVPKDGPSAGIGMVTAMVSTLTGIPVRADVAMTGEVTLRGRVLAIGGLKE KLLAALRGGIKTVLIPEENRKDLAEIPTNIKEGLEIVPVSHVDEVLARALVTTPEAIEWTEADDLATQPAPTVAGPATSP TAH
Sequences:
>Translated_803_residues MPMNLYPLLPLRDIVVFPGMVVPLFVGREKSVAALEAAMSGDKDIFLLAQLDPGCDDPDRDDLYDTGVIASVLQLLKLPD GTVRVLVEGRERAMLEGLREETTAQGAMLIAQVEPIEPVVSQGTEISAMMRSVVDQFAEYAKLSKKLPQDAGGQLGDIED AGKLADSVAANLAAKVADKQAVLSENDPMKRLEMVLSFMEGELGVLQVERKIRGRVKRQMEKTQREYYLNEQLKAIQSEL GGGDGEEANEIAELQEKIDKLKLSKEARAKATAELKKLKTMQPMSAEATVIRNYLDVLLGLPWGKRSKLKKDIPAAQAVL DADHYALDKVKDRIVEYLAVQARTNKLKGPILCLVGPPGVGKTSLGKSIAKATGRQFVRQSLGGVRDEAEIRGHRRTYIG SLPGKIVTNLKKAGTANPLFLLDEIDKLGQDFRGDPASALLEVLDPEQNAKFQDHYLELDIDLSDVMFVCTANSLNLPQP LLDRMEIIRLEGYTEDEKVEIAERHLVRKQVEAHGLKKGEFTLTQEGLRDLIRYYTREAGVRTLEREIARLARKSLRQIL EGKTKSVTITSDNLSDFAGVRKFRHGVSDEENQVGAVTGLAWTEVGGELLTIESVTVPGKGAVKTTGKLGEVMSESVQMA FSFVKARSPAYGIKPSIFNRKDLHIHLPEGAVPKDGPSAGIGMVTAMVSTLTGIPVRADVAMTGEVTLRGRVLAIGGLKE KLLAALRGGIKTVLIPEENRKDLAEIPTNIKEGLEIVPVSHVDEVLARALVTTPEAIEWTEADDLATQPAPTVAGPATSP TAH >Mature_802_residues PMNLYPLLPLRDIVVFPGMVVPLFVGREKSVAALEAAMSGDKDIFLLAQLDPGCDDPDRDDLYDTGVIASVLQLLKLPDG TVRVLVEGRERAMLEGLREETTAQGAMLIAQVEPIEPVVSQGTEISAMMRSVVDQFAEYAKLSKKLPQDAGGQLGDIEDA GKLADSVAANLAAKVADKQAVLSENDPMKRLEMVLSFMEGELGVLQVERKIRGRVKRQMEKTQREYYLNEQLKAIQSELG GGDGEEANEIAELQEKIDKLKLSKEARAKATAELKKLKTMQPMSAEATVIRNYLDVLLGLPWGKRSKLKKDIPAAQAVLD ADHYALDKVKDRIVEYLAVQARTNKLKGPILCLVGPPGVGKTSLGKSIAKATGRQFVRQSLGGVRDEAEIRGHRRTYIGS LPGKIVTNLKKAGTANPLFLLDEIDKLGQDFRGDPASALLEVLDPEQNAKFQDHYLELDIDLSDVMFVCTANSLNLPQPL LDRMEIIRLEGYTEDEKVEIAERHLVRKQVEAHGLKKGEFTLTQEGLRDLIRYYTREAGVRTLEREIARLARKSLRQILE GKTKSVTITSDNLSDFAGVRKFRHGVSDEENQVGAVTGLAWTEVGGELLTIESVTVPGKGAVKTTGKLGEVMSESVQMAF SFVKARSPAYGIKPSIFNRKDLHIHLPEGAVPKDGPSAGIGMVTAMVSTLTGIPVRADVAMTGEVTLRGRVLAIGGLKEK LLAALRGGIKTVLIPEENRKDLAEIPTNIKEGLEIVPVSHVDEVLARALVTTPEAIEWTEADDLATQPAPTVAGPATSPT AH
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI21396489, Length=614, Percent_Identity=44.1368078175896, Blast_Score=513, Evalue=1e-145, Organism=Homo sapiens, GI31377667, Length=566, Percent_Identity=45.7597173144876, Blast_Score=507, Evalue=1e-143, Organism=Escherichia coli, GI1786643, Length=777, Percent_Identity=60.6177606177606, Blast_Score=949, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=714, Percent_Identity=38.515406162465, Blast_Score=484, Evalue=1e-137, Organism=Caenorhabditis elegans, GI17556486, Length=542, Percent_Identity=39.1143911439114, Blast_Score=425, Evalue=1e-119, Organism=Saccharomyces cerevisiae, GI6319449, Length=721, Percent_Identity=40.9153952843273, Blast_Score=513, Evalue=1e-146, Organism=Drosophila melanogaster, GI221513036, Length=701, Percent_Identity=39.5149786019972, Blast_Score=500, Evalue=1e-141, Organism=Drosophila melanogaster, GI24666867, Length=701, Percent_Identity=39.5149786019972, Blast_Score=500, Evalue=1e-141,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR008268 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 87485; Mature: 87354
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMNLYPLLPLRDIVVFPGMVVPLFVGREKSVAALEAAMSGDKDIFLLAQLDPGCDDPDR CCCCCCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC DDLYDTGVIASVLQLLKLPDGTVRVLVEGRERAMLEGLREETTAQGAMLIAQVEPIEPVV CHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHH SQGTEISAMMRSVVDQFAEYAKLSKKLPQDAGGQLGDIEDAGKLADSVAANLAAKVADKQ HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AVLSENDPMKRLEMVLSFMEGELGVLQVERKIRGRVKRQMEKTQREYYLNEQLKAIQSEL HHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGGDGEEANEIAELQEKIDKLKLSKEARAKATAELKKLKTMQPMSAEATVIRNYLDVLLG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC LPWGKRSKLKKDIPAAQAVLDADHYALDKVKDRIVEYLAVQARTNKLKGPILCLVGPPGV CCCCCHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC GKTSLGKSIAKATGRQFVRQSLGGVRDEAEIRGHRRTYIGSLPGKIVTNLKKAGTANPLF CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCCCCHHHHHHHHHCCCCCCCH LLDEIDKLGQDFRGDPASALLEVLDPEQNAKFQDHYLELDIDLSDVMFVCTANSLNLPQP HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHEEEEEECCCCCCCHH LLDRMEIIRLEGYTEDEKVEIAERHLVRKQVEAHGLKKGEFTLTQEGLRDLIRYYTREAG HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH VRTLEREIARLARKSLRQILEGKTKSVTITSDNLSDFAGVRKFRHGVSDEENQVGAVTGL HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCH AWTEVGGELLTIESVTVPGKGAVKTTGKLGEVMSESVQMAFSFVKARSPAYGIKPSIFNR HHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC KDLHIHLPEGAVPKDGPSAGIGMVTAMVSTLTGIPVRADVAMTGEVTLRGRVLAIGGLKE CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECEEEECCEEEEEEEEEECCHHH KLLAALRGGIKTVLIPEENRKDLAEIPTNIKEGLEIVPVSHVDEVLARALVTTPEAIEWT HHHHHHHCCCEEEEECCCCCHHHHHCCCCHHCCCEEECHHHHHHHHHHHHHCCCCCCCCC EADDLATQPAPTVAGPATSPTAH CCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PMNLYPLLPLRDIVVFPGMVVPLFVGREKSVAALEAAMSGDKDIFLLAQLDPGCDDPDR CCCCCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC DDLYDTGVIASVLQLLKLPDGTVRVLVEGRERAMLEGLREETTAQGAMLIAQVEPIEPVV CHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHH SQGTEISAMMRSVVDQFAEYAKLSKKLPQDAGGQLGDIEDAGKLADSVAANLAAKVADKQ HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AVLSENDPMKRLEMVLSFMEGELGVLQVERKIRGRVKRQMEKTQREYYLNEQLKAIQSEL HHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGGDGEEANEIAELQEKIDKLKLSKEARAKATAELKKLKTMQPMSAEATVIRNYLDVLLG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC LPWGKRSKLKKDIPAAQAVLDADHYALDKVKDRIVEYLAVQARTNKLKGPILCLVGPPGV CCCCCHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC GKTSLGKSIAKATGRQFVRQSLGGVRDEAEIRGHRRTYIGSLPGKIVTNLKKAGTANPLF CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCCCCHHHHHHHHHCCCCCCCH LLDEIDKLGQDFRGDPASALLEVLDPEQNAKFQDHYLELDIDLSDVMFVCTANSLNLPQP HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHEEEEEECCCCCCCHH LLDRMEIIRLEGYTEDEKVEIAERHLVRKQVEAHGLKKGEFTLTQEGLRDLIRYYTREAG HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH VRTLEREIARLARKSLRQILEGKTKSVTITSDNLSDFAGVRKFRHGVSDEENQVGAVTGL HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCH AWTEVGGELLTIESVTVPGKGAVKTTGKLGEVMSESVQMAFSFVKARSPAYGIKPSIFNR HHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC KDLHIHLPEGAVPKDGPSAGIGMVTAMVSTLTGIPVRADVAMTGEVTLRGRVLAIGGLKE CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECEEEECCEEEEEEEEEECCHHH KLLAALRGGIKTVLIPEENRKDLAEIPTNIKEGLEIVPVSHVDEVLARALVTTPEAIEWT HHHHHHHCCCEEEEECCCCCHHHHHCCCCHHCCCEEECHHHHHHHHHHHHHCCCCCCCCC EADDLATQPAPTVAGPATSPTAH CCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8655539 [H]