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The map label for this gene is radC [C]

Identifier: 87199332

GI number: 87199332

Start: 1356054

End: 1356791

Strand: Reverse

Name: radC [C]

Synonym: Saro_1311

Alternate gene names: 87199332

Gene position: 1356791-1356054 (Counterclockwise)

Preceding gene: 87199341

Following gene: 87199331

Centisome position: 38.1

GC content: 65.99

Gene sequence:

>738_bases
ATGACCGATCAAACCCGACTCTTTCCTGAACAGGAACCCGGCAAGGGGACGCGAACCGATTTCGACGGAGCGGACCCCAG
CGGCCATCGCGCGCGCCTGCGCAAACGGCTGATGGCCGGCGGCGAGGATGCCCTGGCCGACCATGAGGTGATCGAATACC
TGCTCATGGTGGCACGGCCGCGCATCGACACCAAGCCCATCGCCCGCTCGCTCGTCCAACGTTTCGGCAGCCTTGCCGGC
GTGCTCAATGCCGATCCGCAGGCGCTGGCGCTCCACCCCAACATGGGCGAGACAAGCGCCGCCGCGCTCCGGATCGTAGC
GCTCGCCGCCCGCAGGCTCGCCCGCACCGTGGTGCGCGAACAGCCGATCTTGTCCAACTGGCAGGCGCTGCTCGATTACC
TGCACATCGACATGGCGCACCTGACGGTGGAACGCGTGCGGGTGCTCTACCTGAATTCCCAGAACATGCTGATCCTGGAC
CATCTGGTCAGCGAGGGCACGCTGGACGAAAGCCCGATCTACACGCGCGAGGTCATCCGCAAGGCGATGGACGTTGGCGC
CGCGGCGATGATCCTCGTCCACAACCACCCGTCAGGCTCGCCCAAGCCCAGCCGCGCCGACATCCAGGTGACCCAGAAGG
TGATGGAAGCCGCGCGGCTGATGGGCATGACGGTGCACGATCACATCGTGATCGGGCGCGAGGGCCACACCTCGCTCAAG
GCCCAGGGACTTATCTGA

Upstream 100 bases:

>100_bases
GAAACGATCTGCCATCTGCCCCCTTCTTGCGCACTCCCCCCGCTTGGGCAATGCACGGCATTGAACGCGCCAGCCCGCAA
GTGGTGCCCGCAAACGTCAC

Downstream 100 bases:

>100_bases
CCGGCGGACCTGCCGGCCCAACCCGTCAGATCGCCTTCGAACCCGCGTCGCCCACGGACTCGATGTCGCGGCCAAGGCCC
TTCACGGTGTTGCATCCGGC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTDQTRLFPEQEPGKGTRTDFDGADPSGHRARLRKRLMAGGEDALADHEVIEYLLMVARPRIDTKPIARSLVQRFGSLAG
VLNADPQALALHPNMGETSAAALRIVALAARRLARTVVREQPILSNWQALLDYLHIDMAHLTVERVRVLYLNSQNMLILD
HLVSEGTLDESPIYTREVIRKAMDVGAAAMILVHNHPSGSPKPSRADIQVTQKVMEAARLMGMTVHDHIVIGREGHTSLK
AQGLI

Sequences:

>Translated_245_residues
MTDQTRLFPEQEPGKGTRTDFDGADPSGHRARLRKRLMAGGEDALADHEVIEYLLMVARPRIDTKPIARSLVQRFGSLAG
VLNADPQALALHPNMGETSAAALRIVALAARRLARTVVREQPILSNWQALLDYLHIDMAHLTVERVRVLYLNSQNMLILD
HLVSEGTLDESPIYTREVIRKAMDVGAAAMILVHNHPSGSPKPSRADIQVTQKVMEAARLMGMTVHDHIVIGREGHTSLK
AQGLI
>Mature_244_residues
TDQTRLFPEQEPGKGTRTDFDGADPSGHRARLRKRLMAGGEDALADHEVIEYLLMVARPRIDTKPIARSLVQRFGSLAGV
LNADPQALALHPNMGETSAAALRIVALAARRLARTVVREQPILSNWQALLDYLHIDMAHLTVERVRVLYLNSQNMLILDH
LVSEGTLDESPIYTREVIRKAMDVGAAAMILVHNHPSGSPKPSRADIQVTQKVMEAARLMGMTVHDHIVIGREGHTSLKA
QGLI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=212, Percent_Identity=31.6037735849057, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI2367100, Length=150, Percent_Identity=35.3333333333333, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788997, Length=122, Percent_Identity=38.5245901639344, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788312, Length=122, Percent_Identity=38.5245901639344, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 27033; Mature: 26902

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQTRLFPEQEPGKGTRTDFDGADPSGHRARLRKRLMAGGEDALADHEVIEYLLMVARP
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
RIDTKPIARSLVQRFGSLAGVLNADPQALALHPNMGETSAAALRIVALAARRLARTVVRE
CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC
QPILSNWQALLDYLHIDMAHLTVERVRVLYLNSQNMLILDHLVSEGTLDESPIYTREVIR
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEHHHHHHCCCCCCCCCCHHHHHHH
KAMDVGAAAMILVHNHPSGSPKPSRADIQVTQKVMEAARLMGMTVHDHIVIGREGHTSLK
HHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEHHEEEECCCCCCCCC
AQGLI
CCCCC
>Mature Secondary Structure 
TDQTRLFPEQEPGKGTRTDFDGADPSGHRARLRKRLMAGGEDALADHEVIEYLLMVARP
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
RIDTKPIARSLVQRFGSLAGVLNADPQALALHPNMGETSAAALRIVALAARRLARTVVRE
CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC
QPILSNWQALLDYLHIDMAHLTVERVRVLYLNSQNMLILDHLVSEGTLDESPIYTREVIR
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEHHHHHHCCCCCCCCCCHHHHHHH
KAMDVGAAAMILVHNHPSGSPKPSRADIQVTQKVMEAARLMGMTVHDHIVIGREGHTSLK
HHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEHHEEEECCCCCCCCC
AQGLI
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA