Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is 87199295

Identifier: 87199295

GI number: 87199295

Start: 1313066

End: 1313875

Strand: Reverse

Name: 87199295

Synonym: Saro_1274

Alternate gene names: NA

Gene position: 1313875-1313066 (Counterclockwise)

Preceding gene: 87199298

Following gene: 87199294

Centisome position: 36.89

GC content: 61.85

Gene sequence:

>810_bases
ATGTCCTCACCGCCCATCCAGATCAGGACGAGCCCCCCGACGGGCTCCACGGGTGTCCGGCCAATACGTCTCCACGCAGC
CCCCCGCGGCGATAACGACCGTATCAGGGCGGAAGTCGCTGGCCGCATCTTCTACTTCGGCAACGCGTCCGACACGCCGG
AGATCGCGCACGCGAAGCGCCTGTGCAATTCTGCTTATGTAGCAAAGATCTCGGACGACTACACCGCCTTCGTCGATGAC
GCGAAGAACTACTACAACACCGTCTTCGTGGTCGGCACCGACCCGGCGCGCGTCCGCAAGTTCCTGAGGACATATCGCCC
GCTGTTCATGCGCAAGGCCAAGATCGCGCTGGTCAAGGAAAGCCGGCCACGCAGCCGGGCCCAGATGCTGAACACCGGGT
TCGATGACGTCTTCGACCTCGATACACACCCCCTGGAGGCCAGTGTGCGCCTCGACGCGATCCTCGGTCGCGTGGCCCAC
TCGCACGCTGCCGAGACTTTCGACGACGTTCTCAAGACCCACATGCGGTTCTATGCGGATACCAAGCTACTCGAGCGCGA
GGTGCGCATCCTGGCATTGCTGATCGCCAACCGCGGCATGCCGGTACGCAAGCACCTGCTGACCGCTTCAACCAAGTCGC
CGCACAAGTCCATCACGCCCAAGTCGTTGCAAGTCCTGATCTCGGGCCTCAGGGGCAAATTGAAGCCGAACTTCAGGATA
GTGAGCCATGGCGCATCGGGATATTCCTTCGAAGAGGTATCTGCAGTGGCAGAACGGCTCGCCACCGCCACCAGAGCCGA
GACTCATTGA

Upstream 100 bases:

>100_bases
CCCCGGCTTACGCAGGATTGCATTAACCATTCGTCCGGATTGCAACCGATGCGGATACGACTAAGGATATGTACATATAT
AAACGAAAGTTAATAAACGC

Downstream 100 bases:

>100_bases
GGCGGCGAATCTGCGCGAGAAACTGCTGAAGCTGGCCGACTGCGTGGAGCGCGAATGCCGCCCGTCCCCGCTCGACTTCT
TCGACGCGCGCGAGGCGATC

Product: response regulator receiver domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSSPPIQIRTSPPTGSTGVRPIRLHAAPRGDNDRIRAEVAGRIFYFGNASDTPEIAHAKRLCNSAYVAKISDDYTAFVDD
AKNYYNTVFVVGTDPARVRKFLRTYRPLFMRKAKIALVKESRPRSRAQMLNTGFDDVFDLDTHPLEASVRLDAILGRVAH
SHAAETFDDVLKTHMRFYADTKLLEREVRILALLIANRGMPVRKHLLTASTKSPHKSITPKSLQVLISGLRGKLKPNFRI
VSHGASGYSFEEVSAVAERLATATRAETH

Sequences:

>Translated_269_residues
MSSPPIQIRTSPPTGSTGVRPIRLHAAPRGDNDRIRAEVAGRIFYFGNASDTPEIAHAKRLCNSAYVAKISDDYTAFVDD
AKNYYNTVFVVGTDPARVRKFLRTYRPLFMRKAKIALVKESRPRSRAQMLNTGFDDVFDLDTHPLEASVRLDAILGRVAH
SHAAETFDDVLKTHMRFYADTKLLEREVRILALLIANRGMPVRKHLLTASTKSPHKSITPKSLQVLISGLRGKLKPNFRI
VSHGASGYSFEEVSAVAERLATATRAETH
>Mature_268_residues
SSPPIQIRTSPPTGSTGVRPIRLHAAPRGDNDRIRAEVAGRIFYFGNASDTPEIAHAKRLCNSAYVAKISDDYTAFVDDA
KNYYNTVFVVGTDPARVRKFLRTYRPLFMRKAKIALVKESRPRSRAQMLNTGFDDVFDLDTHPLEASVRLDAILGRVAHS
HAAETFDDVLKTHMRFYADTKLLEREVRILALLIANRGMPVRKHLLTASTKSPHKSITPKSLQVLISGLRGKLKPNFRIV
SHGASGYSFEEVSAVAERLATATRAETH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29983; Mature: 29852

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPPIQIRTSPPTGSTGVRPIRLHAAPRGDNDRIRAEVAGRIFYFGNASDTPEIAHAKR
CCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEHEEEEEEEEEECCCCCCHHHHHHHH
LCNSAYVAKISDDYTAFVDDAKNYYNTVFVVGTDPARVRKFLRTYRPLFMRKAKIALVKE
HHCCCEEEEECCCHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEC
SRPRSRAQMLNTGFDDVFDLDTHPLEASVRLDAILGRVAHSHAAETFDDVLKTHMRFYAD
CCCHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKLLEREVRILALLIANRGMPVRKHLLTASTKSPHKSITPKSLQVLISGLRGKLKPNFRI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE
VSHGASGYSFEEVSAVAERLATATRAETH
EECCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSPPIQIRTSPPTGSTGVRPIRLHAAPRGDNDRIRAEVAGRIFYFGNASDTPEIAHAKR
CCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEHEEEEEEEEEECCCCCCHHHHHHHH
LCNSAYVAKISDDYTAFVDDAKNYYNTVFVVGTDPARVRKFLRTYRPLFMRKAKIALVKE
HHCCCEEEEECCCHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEC
SRPRSRAQMLNTGFDDVFDLDTHPLEASVRLDAILGRVAHSHAAETFDDVLKTHMRFYAD
CCCHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKLLEREVRILALLIANRGMPVRKHLLTASTKSPHKSITPKSLQVLISGLRGKLKPNFRI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE
VSHGASGYSFEEVSAVAERLATATRAETH
EECCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA