| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is thiL [H]
Identifier: 87199090
GI number: 87199090
Start: 1112500
End: 1113414
Strand: Reverse
Name: thiL [H]
Synonym: Saro_1068
Alternate gene names: 87199090
Gene position: 1113414-1112500 (Counterclockwise)
Preceding gene: 87199097
Following gene: 87199089
Centisome position: 31.26
GC content: 68.52
Gene sequence:
>915_bases TTGTGGAGACAGCCGCTCCACCCCATAGACCGGGGCGTGAGCAAGGAATCCGCCCTGATCGAAGCGATGCGCGCGCTGGC CACGCACCCGGCCGCCCGCGCCCTCGCGGACGATTGCGCAGTGCTGGACTTCGGCGGCGAAACGATGGTCCTGACCCACG ACATGATGGTCGAGGGCGTGCACTGGCTGCCGGGGCAGGACATGGCGGATGTGGCGTGGAAGCTGGTGGCGACGAACCTG TCGGACCTTGCATCCAAGGGCGCGGAACCTGTCGGCGTCCTGCTGGGGTATACGCTCGACAACGATGAAGACGCGCGCTT CATCGAAGGGCTCGGTGCGGCGCTGGCGACCTTCGGCGTTCCGCTGCTGGGCGGCGACACGGTAAGCGGCAATGGCCCGC GCAGCCTCGGCCTGACTGCCCTGGGCCGCGCGACTTCACATCCCGTGCCCGACCGGCGCGGCGCCAGGGTGGGCGATGTG CTGTGGATCACCGGCCCGGTCGGAGCGGCGATGCTCGGGTTCGAGGCGCTGCGCGATGGCACCGCCGCGGACAGCACGGC CTTTCGTCGGCCCGTGCCACGCCTTGCCGAAGGTCGCGCGCTGGCAGGCATGGTCACGGCTATGATGGACGTGTCCGACG GCCTGCTGATCGATGCAGCGCGCATGGCGGATGCCAGCAACGTGACTTTCGCCATCGACAGTGCCTCGGTCGCCTTCCCG CCCGCCCTTCCCGCCACGCGCCGCGACGAGGCGATGCGCTGGGGCGATGATTACGAGTTGCTGTTCTGCCTTCCCGCACG ATCGGTTCCACCGATCCCTGCCGTTCGCATCGGCCATGCTGTAGCCCGCATGGCAACAGCCGTTACGGTCGACGGCGTGC CACCCGAGGGTCGGCTCGGTTATTCGCACGATTAA
Upstream 100 bases:
>100_bases CCGCATCGACGATATAGGCTGTAGCCATTTCTTCTCCGACTCCTCTCGAATACTCTTTAATCGAACGATTAAGGACCGCA AGGCCGCTGGTCAAGCAGGC
Downstream 100 bases:
>100_bases AAACCGACTGGCGCACCGCATCGAAGGACTTGCGGGGCGGGAATAAACCTATAGCTTCCGCCCGACCCGCAACGACGGGG ACGGATCATTCGTGGTCCGG
Product: thiamine-monophosphate kinase
Products: NA
Alternate protein names: Thiamine-phosphate kinase [H]
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MWRQPLHPIDRGVSKESALIEAMRALATHPAARALADDCAVLDFGGETMVLTHDMMVEGVHWLPGQDMADVAWKLVATNL SDLASKGAEPVGVLLGYTLDNDEDARFIEGLGAALATFGVPLLGGDTVSGNGPRSLGLTALGRATSHPVPDRRGARVGDV LWITGPVGAAMLGFEALRDGTAADSTAFRRPVPRLAEGRALAGMVTAMMDVSDGLLIDAARMADASNVTFAIDSASVAFP PALPATRRDEAMRWGDDYELLFCLPARSVPPIPAVRIGHAVARMATAVTVDGVPPEGRLGYSHD
Sequences:
>Translated_304_residues MWRQPLHPIDRGVSKESALIEAMRALATHPAARALADDCAVLDFGGETMVLTHDMMVEGVHWLPGQDMADVAWKLVATNL SDLASKGAEPVGVLLGYTLDNDEDARFIEGLGAALATFGVPLLGGDTVSGNGPRSLGLTALGRATSHPVPDRRGARVGDV LWITGPVGAAMLGFEALRDGTAADSTAFRRPVPRLAEGRALAGMVTAMMDVSDGLLIDAARMADASNVTFAIDSASVAFP PALPATRRDEAMRWGDDYELLFCLPARSVPPIPAVRIGHAVARMATAVTVDGVPPEGRLGYSHD >Mature_304_residues MWRQPLHPIDRGVSKESALIEAMRALATHPAARALADDCAVLDFGGETMVLTHDMMVEGVHWLPGQDMADVAWKLVATNL SDLASKGAEPVGVLLGYTLDNDEDARFIEGLGAALATFGVPLLGGDTVSGNGPRSLGLTALGRATSHPVPDRRGARVGDV LWITGPVGAAMLGFEALRDGTAADSTAFRRPVPRLAEGRALAGMVTAMMDVSDGLLIDAARMADASNVTFAIDSASVAFP PALPATRRDEAMRWGDDYELLFCLPARSVPPIPAVRIGHAVARMATAVTVDGVPPEGRLGYSHD
Specific function: Thiamine biosynthesis. [C]
COG id: COG0611
COG function: function code H; Thiamine monophosphate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thiamine-monophosphate kinase family [H]
Homologues:
Organism=Escherichia coli, GI1786619, Length=251, Percent_Identity=35.8565737051793, Blast_Score=123, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000728 - InterPro: IPR010918 - InterPro: IPR016188 - InterPro: IPR006283 [H]
Pfam domain/function: PF00586 AIRS; PF02769 AIRS_C [H]
EC number: =2.7.4.16 [H]
Molecular weight: Translated: 31910; Mature: 31910
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWRQPLHPIDRGVSKESALIEAMRALATHPAARALADDCAVLDFGGETMVLTHDMMVEGV CCCCCCCHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCEEEEEHHHHHCCC HWLPGQDMADVAWKLVATNLSDLASKGAEPVGVLLGYTLDNDEDARFIEGLGAALATFGV CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCC PLLGGDTVSGNGPRSLGLTALGRATSHPVPDRRGARVGDVLWITGPVGAAMLGFEALRDG EEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCC TAADSTAFRRPVPRLAEGRALAGMVTAMMDVSDGLLIDAARMADASNVTFAIDSASVAFP CCCCCHHHHCCCCHHHCCCHHHHHHHHHHHCCCCEEEEHHHHCCCCCEEEEECCCCEECC PALPATRRDEAMRWGDDYELLFCLPARSVPPIPAVRIGHAVARMATAVTVDGVPPEGRLG CCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCC YSHD CCCC >Mature Secondary Structure MWRQPLHPIDRGVSKESALIEAMRALATHPAARALADDCAVLDFGGETMVLTHDMMVEGV CCCCCCCHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCEEEEEHHHHHCCC HWLPGQDMADVAWKLVATNLSDLASKGAEPVGVLLGYTLDNDEDARFIEGLGAALATFGV CCCCCCCHHHHHHHHHHHCHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCC PLLGGDTVSGNGPRSLGLTALGRATSHPVPDRRGARVGDVLWITGPVGAAMLGFEALRDG EEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCC TAADSTAFRRPVPRLAEGRALAGMVTAMMDVSDGLLIDAARMADASNVTFAIDSASVAFP CCCCCHHHHCCCCHHHCCCHHHHHHHHHHHCCCCEEEEHHHHCCCCCEEEEECCCCEECC PALPATRRDEAMRWGDDYELLFCLPARSVPPIPAVRIGHAVARMATAVTVDGVPPEGRLG CCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCC YSHD CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]