| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199088
Identifier: 87199088
GI number: 87199088
Start: 1108934
End: 1110097
Strand: Reverse
Name: 87199088
Synonym: Saro_1066
Alternate gene names: NA
Gene position: 1110097-1108934 (Counterclockwise)
Preceding gene: 87199089
Following gene: 87199087
Centisome position: 31.17
GC content: 65.03
Gene sequence:
>1164_bases TTGCATGCCCCGTCCTTAACCCTGATGCCCGATCTGTCGCGCCCGGCGGCCGAACTGATCACCAGCATGGAGCCCTGGGA CCAGTGGGCAGGCGCGCAAGCGATAAGCCTTTGGGCGGAGCTTGCCGATGCGGCGACGACGCCGAACCCCTTCTTCGAAC ACTGGTATCTCCTTCCCGCACTGGAAGCCTTCGATGCCGACCGTGCGGCACGCATCCTCGCGATAAGGACCGGCGGCAGG CTGATCGGGCTCATGCCGATCGTCATGCAACGCAGCTATCAACGCTGGCCCCTGCGACACCTTGCCTCGTGGCAGCACGC CAATGCCTTCCTTGGTACACCGCTGGTGCGCGCCGGATGCGAGACACTGTTCTGGCAAGGATTGCTGGATTGGGCCGACA AGGCAGCGCCCGACGATGGCGCGCTGTTCCTGCACCTGCCGGCAATGCCCCTCGAGCAGCCGCTGACCCAGTGCCTGATG GACCTGTGCTTCGAAAATGGCCGTCCCGCGGGACTGGTGATGCGCGAACAGAGGGCCTTGCTGCACTCTCCGCTGAGCCC GGAAGCCTATCTGGAACGTGCGCTGCGAGGCAAGAAGCGCAAGGAACTTCGCCGCCAACATGCCAGGCTTGCCGAACAGG GAGCGCTGGCGTTCGAGCGGCGCGAGGATGCGCAAGGGATCGACGCGTGGATCGAGACCTTTCTGGCGCTTGAAGCGGCT GGCTGGAAAGGGCGGTCGGCAAGCGCCATGGCCTTTGCCCCCGAAACCGCATCGCTCTTCCGCCAGGCACTGATCCAGGC GGCGGCGCTCGGTAAGCTGGAACGGCTTTCGCTGACGCTGGACGGGCGACCTGTCGCGATGCTGGCGAACTTCATCACGC CGCCGGGCAGCTTCTCCTACAAGACCGCATTCGACGAGACGCTCGCCCGCTTCTCGCCCGGCGTCCTCCTGCAACTGGAA AACCTCGCATTGCTGCGCCGGGACGACGTGACCTGGTGCGATAGCTGCGCCGCGCCCGATCACCCGATGATCGACAGCAT CTGGACCGAACGGCGCCCCATCGGGCGCCTGTCGGTCGGCATCGGTGGCAAGATCCGGCGTGCGATCTTCAAAACGACGC TTGCCCTCGAACTGCAACGCAACCCGACTGGAATCGGTGCATGA
Upstream 100 bases:
>100_bases GGTTTTTCCTTGCCCTCGAAACGGGAACAGCCATCACAATCAGCGCGTTAACCAGCTCTTCGGGCCTGCTCCGCTATCGA GGCGACGGAGACTCGCCAAA
Downstream 100 bases:
>100_bases ACCTTGCAACTCCTTCGCAGATGACCGCCGCGTCAATCGAGACATTCGATGCCACGTCATGCGCGGCCTTTTCCGCCTGC TATCCCGAGACGCCGCACAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MHAPSLTLMPDLSRPAAELITSMEPWDQWAGAQAISLWAELADAATTPNPFFEHWYLLPALEAFDADRAARILAIRTGGR LIGLMPIVMQRSYQRWPLRHLASWQHANAFLGTPLVRAGCETLFWQGLLDWADKAAPDDGALFLHLPAMPLEQPLTQCLM DLCFENGRPAGLVMREQRALLHSPLSPEAYLERALRGKKRKELRRQHARLAEQGALAFERREDAQGIDAWIETFLALEAA GWKGRSASAMAFAPETASLFRQALIQAAALGKLERLSLTLDGRPVAMLANFITPPGSFSYKTAFDETLARFSPGVLLQLE NLALLRRDDVTWCDSCAAPDHPMIDSIWTERRPIGRLSVGIGGKIRRAIFKTTLALELQRNPTGIGA
Sequences:
>Translated_387_residues MHAPSLTLMPDLSRPAAELITSMEPWDQWAGAQAISLWAELADAATTPNPFFEHWYLLPALEAFDADRAARILAIRTGGR LIGLMPIVMQRSYQRWPLRHLASWQHANAFLGTPLVRAGCETLFWQGLLDWADKAAPDDGALFLHLPAMPLEQPLTQCLM DLCFENGRPAGLVMREQRALLHSPLSPEAYLERALRGKKRKELRRQHARLAEQGALAFERREDAQGIDAWIETFLALEAA GWKGRSASAMAFAPETASLFRQALIQAAALGKLERLSLTLDGRPVAMLANFITPPGSFSYKTAFDETLARFSPGVLLQLE NLALLRRDDVTWCDSCAAPDHPMIDSIWTERRPIGRLSVGIGGKIRRAIFKTTLALELQRNPTGIGA >Mature_387_residues MHAPSLTLMPDLSRPAAELITSMEPWDQWAGAQAISLWAELADAATTPNPFFEHWYLLPALEAFDADRAARILAIRTGGR LIGLMPIVMQRSYQRWPLRHLASWQHANAFLGTPLVRAGCETLFWQGLLDWADKAAPDDGALFLHLPAMPLEQPLTQCLM DLCFENGRPAGLVMREQRALLHSPLSPEAYLERALRGKKRKELRRQHARLAEQGALAFERREDAQGIDAWIETFLALEAA GWKGRSASAMAFAPETASLFRQALIQAAALGKLERLSLTLDGRPVAMLANFITPPGSFSYKTAFDETLARFSPGVLLQLE NLALLRRDDVTWCDSCAAPDHPMIDSIWTERRPIGRLSVGIGGKIRRAIFKTTLALELQRNPTGIGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42961; Mature: 42961
Theoretical pI: Translated: 7.57; Mature: 7.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAPSLTLMPDLSRPAAELITSMEPWDQWAGAQAISLWAELADAATTPNPFFEHWYLLPA CCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LEAFDADRAARILAIRTGGRLIGLMPIVMQRSYQRWPLRHLASWQHANAFLGTPLVRAGC HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHCCHHHHHHH ETLFWQGLLDWADKAAPDDGALFLHLPAMPLEQPLTQCLMDLCFENGRPAGLVMREQRAL HHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LHSPLSPEAYLERALRGKKRKELRRQHARLAEQGALAFERREDAQGIDAWIETFLALEAA HCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHC GWKGRSASAMAFAPETASLFRQALIQAAALGKLERLSLTLDGRPVAMLANFITPPGSFSY CCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCCCCH KTAFDETLARFSPGVLLQLENLALLRRDDVTWCDSCAAPDHPMIDSIWTERRPIGRLSVG HHHHHHHHHHCCCCEEEEECCHHHHHCCCCCHHHCCCCCCCCCHHHHHHCCCCCCEEEEC IGGKIRRAIFKTTLALELQRNPTGIGA CCHHHHHHHHHHHHHEEEECCCCCCCC >Mature Secondary Structure MHAPSLTLMPDLSRPAAELITSMEPWDQWAGAQAISLWAELADAATTPNPFFEHWYLLPA CCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LEAFDADRAARILAIRTGGRLIGLMPIVMQRSYQRWPLRHLASWQHANAFLGTPLVRAGC HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHCCHHHHHHH ETLFWQGLLDWADKAAPDDGALFLHLPAMPLEQPLTQCLMDLCFENGRPAGLVMREQRAL HHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LHSPLSPEAYLERALRGKKRKELRRQHARLAEQGALAFERREDAQGIDAWIETFLALEAA HCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHC GWKGRSASAMAFAPETASLFRQALIQAAALGKLERLSLTLDGRPVAMLANFITPPGSFSY CCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCCCCH KTAFDETLARFSPGVLLQLENLALLRRDDVTWCDSCAAPDHPMIDSIWTERRPIGRLSVG HHHHHHHHHHCCCCEEEEECCHHHHHCCCCCHHHCCCCCCCCCHHHHHHCCCCCCEEEEC IGGKIRRAIFKTTLALELQRNPTGIGA CCHHHHHHHHHHHHHEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA