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The map label for this gene is srlR [H]

Identifier: 87199070

GI number: 87199070

Start: 1087170

End: 1087943

Strand: Reverse

Name: srlR [H]

Synonym: Saro_1048

Alternate gene names: 87199070

Gene position: 1087943-1087170 (Counterclockwise)

Preceding gene: 87199071

Following gene: 87199063

Centisome position: 30.55

GC content: 67.96

Gene sequence:

>774_bases
ATGCACGCGGCGGAACGGGAACGGCTAATCCTTGATGCTCTGAAGCCAAGCGGCTTCATCAGCTATCGGGATCTCGAGGC
GAGGCTTGATGCCTCCCCCGCGACGATCCGGCGCGACCTGACGCGGCTCGAGGAAACCGGGCAGATCGTGCGCGTCCACG
GCGGCGCCAAGCTGCCCGAGGACGACGGTTCGACCGCCCCGCGCCTGCTCGGCACGCCGTTCGACCAGTCGATCACCCAG
AACCTCGCGGCCAAGCGCGCCATCGGCAAGGCGGCGGCCGCGCTCTGCACGCCGGGCGAAGGCGTGATGATCGATGGCGG
CACCACCACGCTTCAGATGTGCCCCCATCTCGATGGCCTCGGCCTTCAGGTGCTCACCAACTCGCTGCACATCGTCAATG
CCCTGCTGCCGCAGCCTTCCACGCGTATCCTGCTGCCTTCGGGCGCGCTGTTCCGCGAACAGAACATCATCCTTGCCCCC
GCCGGCGAGGAATCCATGCCGCGCTTCCACGCTCCGCGCCTGTTCATGGGCGCGGCAGCGGTCGGCCCCCAGGGCGCGAT
GCAGGCCGACGTCGTGCTGGTCGCCGCCGAGCGCCGCCTGATCGACCGCGCGGAAGAAGTCATCCTGCTCGTCGACAGCA
GCAAGTTCCGCAGCCAGTCGGGCACCATCGTCTGCGGGCTGGACGAAATCGATACGATCATCACCGACAGCGGCATCCCT
TCCGACACCGCCAGGGCGCTCCAGGACGCCGGGGTGAACCTGCTCGTCGTCTAG

Upstream 100 bases:

>100_bases
GATCGGCGCGGGGAACATGCTGAATGCGTCAGCCTGAAAAGAGTGATCGATTTCGATCATTCCCCGGTGCATAAGCGCGC
CGGAAGGGGACGTGAGGGTC

Downstream 100 bases:

>100_bases
ACCGGGGTCTAGGCCGTAAACTCATGAATGGCGCCATCGAGGTTTGAGGCAAAACGGCAGGTGCAAGGAAGGAGGGCGCA
GGAATATGTCGATATTTCAA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MHAAERERLILDALKPSGFISYRDLEARLDASPATIRRDLTRLEETGQIVRVHGGAKLPEDDGSTAPRLLGTPFDQSITQ
NLAAKRAIGKAAAALCTPGEGVMIDGGTTTLQMCPHLDGLGLQVLTNSLHIVNALLPQPSTRILLPSGALFREQNIILAP
AGEESMPRFHAPRLFMGAAAVGPQGAMQADVVLVAAERRLIDRAEEVILLVDSSKFRSQSGTIVCGLDEIDTIITDSGIP
SDTARALQDAGVNLLVV

Sequences:

>Translated_257_residues
MHAAERERLILDALKPSGFISYRDLEARLDASPATIRRDLTRLEETGQIVRVHGGAKLPEDDGSTAPRLLGTPFDQSITQ
NLAAKRAIGKAAAALCTPGEGVMIDGGTTTLQMCPHLDGLGLQVLTNSLHIVNALLPQPSTRILLPSGALFREQNIILAP
AGEESMPRFHAPRLFMGAAAVGPQGAMQADVVLVAAERRLIDRAEEVILLVDSSKFRSQSGTIVCGLDEIDTIITDSGIP
SDTARALQDAGVNLLVV
>Mature_257_residues
MHAAERERLILDALKPSGFISYRDLEARLDASPATIRRDLTRLEETGQIVRVHGGAKLPEDDGSTAPRLLGTPFDQSITQ
NLAAKRAIGKAAAALCTPGEGVMIDGGTTTLQMCPHLDGLGLQVLTNSLHIVNALLPQPSTRILLPSGALFREQNIILAP
AGEESMPRFHAPRLFMGAAAVGPQGAMQADVVLVAAERRLIDRAEEVILLVDSSKFRSQSGTIVCGLDEIDTIITDSGIP
SDTARALQDAGVNLLVV

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=258, Percent_Identity=31.3953488372093, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789519, Length=259, Percent_Identity=34.3629343629344, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1790635, Length=257, Percent_Identity=30.3501945525292, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI226510968, Length=254, Percent_Identity=31.8897637795276, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789829, Length=257, Percent_Identity=28.0155642023346, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082344, Length=253, Percent_Identity=26.0869565217391, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789170, Length=234, Percent_Identity=26.4957264957265, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790753, Length=230, Percent_Identity=30, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787540, Length=261, Percent_Identity=27.2030651340996, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788069, Length=257, Percent_Identity=24.5136186770428, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27297; Mature: 27297

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAAERERLILDALKPSGFISYRDLEARLDASPATIRRDLTRLEETGQIVRVHGGAKLPE
CCCCHHHHHHHHHCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
DDGSTAPRLLGTPFDQSITQNLAAKRAIGKAAAALCTPGEGVMIDGGTTTLQMCPHLDGL
CCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCCCCCC
GLQVLTNSLHIVNALLPQPSTRILLPSGALFREQNIILAPAGEESMPRFHAPRLFMGAAA
CHHHHHHHHHHHHHHCCCCCCEEEECCCCEEECCCEEEEECCCCCCCCCCCCHHEECHHC
VGPQGAMQADVVLVAAERRLIDRAEEVILLVDSSKFRSQSGTIVCGLDEIDTIITDSGIP
CCCCCCCCCCEEEEEHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEHHHHHHHHCCCCCC
SDTARALQDAGVNLLVV
HHHHHHHHHCCCEEEEC
>Mature Secondary Structure
MHAAERERLILDALKPSGFISYRDLEARLDASPATIRRDLTRLEETGQIVRVHGGAKLPE
CCCCHHHHHHHHHCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
DDGSTAPRLLGTPFDQSITQNLAAKRAIGKAAAALCTPGEGVMIDGGTTTLQMCPHLDGL
CCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCCCCCC
GLQVLTNSLHIVNALLPQPSTRILLPSGALFREQNIILAPAGEESMPRFHAPRLFMGAAA
CHHHHHHHHHHHHHHCCCCCCEEEECCCCEEECCCEEEEECCCCCCCCCCCCHHEECHHC
VGPQGAMQADVVLVAAERRLIDRAEEVILLVDSSKFRSQSGTIVCGLDEIDTIITDSGIP
CCCCCCCCCCEEEEEHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEHHHHHHHHCCCCCC
SDTARALQDAGVNLLVV
HHHHHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062173; 9278503; 9205837 [H]