Click here to switch to the map view.

The map label for this gene is 87199050

Identifier: 87199050

GI number: 87199050

Start: 1065625

End: 1067019

Strand: Reverse

Name: 87199050

Synonym: Saro_1028

Alternate gene names: NA

Gene position: 1067019-1065625 (Counterclockwise)

Preceding gene: 87199054

Following gene: 87199046

Centisome position: 29.96

GC content: 67.53

Gene sequence:

>1395_bases
ATGGCTTCCCGACCGCTCTATCTCGGCCCCCGGCTGAAGCGCATCCGGCGCGAACTGGGACTTACCCAGCAGGCCATGGC
GGAGGAGCTGGGGATTTCGCCCAGTTACATCGCGCTGATCGAACGAAACCAGCGACCGCTGACCGCCGACCTTCTGCTGC
GCCTGGCGCGGGCCTACAAACTGGACATGGCAGACCTCGCCGCGGACGAACGCGACGACTATGCGCGGCGTCTTTCCGAT
GCACTGCGCGATCCGATCTTCTCGGACATCGACCTGCCGGCGCTGGAAGTGGCCGACGTCGCCGCGAGCTTTCCCGGCGT
GACCGAGGCAATGTTGCGGCTTTACGGTGCATGGCAGCGCGAACAGCAGGCGTTGGCCGAACAGCGCAACGCCGGGCCGG
GCACGAGCGCAAGCGACCCGATCGGCGAAGCGCGGCGGTTCGTGGCCGCGCGGCGCAACTACTTCCCGACCATAGATTCG
CGGGCAGAGGAACTGGCGTCGGAAATCGACAAAGCGGGCGGGCCGCAGGAATGGCTCCGCAAGCAGGGCGTGCGCGTGCG
CTTCCTGCCGCCCGACGTGATGATGGACGCGGTGCGGCGCTATGACCGGCACAACGAGCAACTGCTGATCGACGACACGC
TGCCACTGTCCAGCCGCGTCTGGCAGTTGCTGCAACACATCGCCTACACCGCGATACGCTCAGAGATCGCGGCGGTGATC
CGGGGGGAAAGCTTTGCCAGCCAGACCGCTGCGAACCTCGTGCGCAGGGCGCTGGCGAGCTATGCCGCAGCGGCCATCGC
CATGCCTTATGACCGGTTTGCGCGAGCCGTGGATGCGAGGCGGTACGACATCGAGGCGCTGTCCGGCCAGTTCGGCACCA
GTTTCGAGCAGGTGGCGCACCGGCTGACGACGCTCAACCGCCCGGGGCAGGAGCGAGTGCCGTTCTTCTTCATACGGGTC
GATTCGGCGGGCAACGTGTCCAAGCGGCTCGACGGTGCCGGCTTCCCGTTCGCGGCGCATGGCGGCGGTTGCCCGCTGTG
GAGCGTGCACGACACCTTCCGCACGCCGGGGCAGATCGTCACGCAATGGCTTGAACTGCCCGACGGACAGCGCTTCTTCT
CGCTTGCGCGCACGGTGACGTCTGGCGGCGGCGGTTTCGACCGTCCGAGGATGACGAGGGCCATCGCGCTGGCCTGTGCA
GCCGAACACGCCCCGAGGCTGGTCTATGCGGCGGGGGGCGATCCAAGGGCGGTTGCGGCAACGCCGATCGGAGTGACCTG
CCGCCTATGCCACCGCGCCCAGTGCACTGCACGCGCCGAACCTCCCATCGGACGCGAGATCCTACCCGACGACTATCGGC
GTGGGGCCGAGCCGTTCAGCTTTGCGGAGAGCTGA

Upstream 100 bases:

>100_bases
AACTGGCGAATCGTGGCTGCGGAACATGCAGCGCGGTCATGTTGTCAAACTTTACAGATTATGCTTGTAAAGTTGTACAG
CCCGTACACGGAGTTCCGCC

Downstream 100 bases:

>100_bases
GCCAATAGCGGATCAACATGGCGACCACGCCAAGCGCAAGCACGCTGCCGAGCCAGATCGCGGCCATCCACGCAAGGCGC
TGCCACAAGGGGCGGGCCTG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MASRPLYLGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQRPLTADLLLRLARAYKLDMADLAADERDDYARRLSD
ALRDPIFSDIDLPALEVADVAASFPGVTEAMLRLYGAWQREQQALAEQRNAGPGTSASDPIGEARRFVAARRNYFPTIDS
RAEELASEIDKAGGPQEWLRKQGVRVRFLPPDVMMDAVRRYDRHNEQLLIDDTLPLSSRVWQLLQHIAYTAIRSEIAAVI
RGESFASQTAANLVRRALASYAAAAIAMPYDRFARAVDARRYDIEALSGQFGTSFEQVAHRLTTLNRPGQERVPFFFIRV
DSAGNVSKRLDGAGFPFAAHGGGCPLWSVHDTFRTPGQIVTQWLELPDGQRFFSLARTVTSGGGGFDRPRMTRAIALACA
AEHAPRLVYAAGGDPRAVAATPIGVTCRLCHRAQCTARAEPPIGREILPDDYRRGAEPFSFAES

Sequences:

>Translated_464_residues
MASRPLYLGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQRPLTADLLLRLARAYKLDMADLAADERDDYARRLSD
ALRDPIFSDIDLPALEVADVAASFPGVTEAMLRLYGAWQREQQALAEQRNAGPGTSASDPIGEARRFVAARRNYFPTIDS
RAEELASEIDKAGGPQEWLRKQGVRVRFLPPDVMMDAVRRYDRHNEQLLIDDTLPLSSRVWQLLQHIAYTAIRSEIAAVI
RGESFASQTAANLVRRALASYAAAAIAMPYDRFARAVDARRYDIEALSGQFGTSFEQVAHRLTTLNRPGQERVPFFFIRV
DSAGNVSKRLDGAGFPFAAHGGGCPLWSVHDTFRTPGQIVTQWLELPDGQRFFSLARTVTSGGGGFDRPRMTRAIALACA
AEHAPRLVYAAGGDPRAVAATPIGVTCRLCHRAQCTARAEPPIGREILPDDYRRGAEPFSFAES
>Mature_463_residues
ASRPLYLGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQRPLTADLLLRLARAYKLDMADLAADERDDYARRLSDA
LRDPIFSDIDLPALEVADVAASFPGVTEAMLRLYGAWQREQQALAEQRNAGPGTSASDPIGEARRFVAARRNYFPTIDSR
AEELASEIDKAGGPQEWLRKQGVRVRFLPPDVMMDAVRRYDRHNEQLLIDDTLPLSSRVWQLLQHIAYTAIRSEIAAVIR
GESFASQTAANLVRRALASYAAAAIAMPYDRFARAVDARRYDIEALSGQFGTSFEQVAHRLTTLNRPGQERVPFFFIRVD
SAGNVSKRLDGAGFPFAAHGGGCPLWSVHDTFRTPGQIVTQWLELPDGQRFFSLARTVTSGGGGFDRPRMTRAIALACAA
EHAPRLVYAAGGDPRAVAATPIGVTCRLCHRAQCTARAEPPIGREILPDDYRRGAEPFSFAES

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 51337; Mature: 51206

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASRPLYLGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQRPLTADLLLRLARAYK
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
LDMADLAADERDDYARRLSDALRDPIFSDIDLPALEVADVAASFPGVTEAMLRLYGAWQR
CCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
EQQALAEQRNAGPGTSASDPIGEARRFVAARRNYFPTIDSRAEELASEIDKAGGPQEWLR
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHH
KQGVRVRFLPPDVMMDAVRRYDRHNEQLLIDDTLPLSSRVWQLLQHIAYTAIRSEIAAVI
HCCCEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RGESFASQTAANLVRRALASYAAAAIAMPYDRFARAVDARRYDIEALSGQFGTSFEQVAH
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RLTTLNRPGQERVPFFFIRVDSAGNVSKRLDGAGFPFAAHGGGCPLWSVHDTFRTPGQIV
HHHHCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCEECHHHHCCCHHHH
TQWLELPDGQRFFSLARTVTSGGGGFDRPRMTRAIALACAAEHAPRLVYAAGGDPRAVAA
HHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEE
TPIGVTCRLCHRAQCTARAEPPIGREILPDDYRRGAEPFSFAES
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ASRPLYLGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQRPLTADLLLRLARAYK
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
LDMADLAADERDDYARRLSDALRDPIFSDIDLPALEVADVAASFPGVTEAMLRLYGAWQR
CCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
EQQALAEQRNAGPGTSASDPIGEARRFVAARRNYFPTIDSRAEELASEIDKAGGPQEWLR
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHH
KQGVRVRFLPPDVMMDAVRRYDRHNEQLLIDDTLPLSSRVWQLLQHIAYTAIRSEIAAVI
HCCCEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RGESFASQTAANLVRRALASYAAAAIAMPYDRFARAVDARRYDIEALSGQFGTSFEQVAH
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RLTTLNRPGQERVPFFFIRVDSAGNVSKRLDGAGFPFAAHGGGCPLWSVHDTFRTPGQIV
HHHHCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCEECHHHHCCCHHHH
TQWLELPDGQRFFSLARTVTSGGGGFDRPRMTRAIALACAAEHAPRLVYAAGGDPRAVAA
HHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEE
TPIGVTCRLCHRAQCTARAEPPIGREILPDDYRRGAEPFSFAES
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]