| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199045
Identifier: 87199045
GI number: 87199045
Start: 1061746
End: 1062315
Strand: Reverse
Name: 87199045
Synonym: Saro_1023
Alternate gene names: NA
Gene position: 1062315-1061746 (Counterclockwise)
Preceding gene: 87199046
Following gene: 87199044
Centisome position: 29.83
GC content: 67.54
Gene sequence:
>570_bases GTGCCCTACGTTCCGCCCCCCGAACTTGCCTCGCTGAGCCTGGCCGAGATTGCCGCGCAGGTTGCCGCGCGCAAGCTGCC CCCGCTGAGCCAGTGGACGCCGCAGGAAAGCGGCAACAGCGAAATGCGCATTGCCGCCGACGGGCGCTGGTACCACCAGG GCGGGGAAATCCGTCGCCCCGCAATGGTCCGCGCCTTCTCGTCGCTGTTGATGCGCGACGAGAACGGGCAGCATTGGCTG GTCACGCCGTTCCAGCGCCTGTCCATCGAAGTCGACGACGCCGCGTTCATCGCCACGGACATGCAGGCAAGGACCGACCC CGAGGGCCGCCCCGCCCTCACCTTCCGGCTCAACAGCGACGACATCGTCATCTGCGGACCGGAGCACCGCTTGCGCGTAG GCGGCACCGCCGACCTTCCCGCCTTCTACCTGGCGGTCCGCCATGGCACCGAAGCCCGGCTCAACCGCAGTACATATGTG CAACTGATCGAACATGCACTGGCCGGGCATGGCGACGAACTGGTCGTCGAAAGTCTCGGGCAGCGCTTCGGGCTGGTACC GCAGCCGTGA
Upstream 100 bases:
>100_bases CAGCGCCGCCTGCTGTGTCGCACCGCCAATCCGGCAGTTCTGCCGCAAGAGGGCATGTTGGGCCCTTGGCGGCGCTGAGC CGATCTGGCATCGGCGGATC
Downstream 100 bases:
>100_bases GCCTGCACGATCGCCTGACCAGGCTCTATGTCGAGGGGCACCGCACCCCGGCGCAGGACCTTTACGAAGACTGGCGCCCC TTGCCCGAACACGGCCTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MPYVPPPELASLSLAEIAAQVAARKLPPLSQWTPQESGNSEMRIAADGRWYHQGGEIRRPAMVRAFSSLLMRDENGQHWL VTPFQRLSIEVDDAAFIATDMQARTDPEGRPALTFRLNSDDIVICGPEHRLRVGGTADLPAFYLAVRHGTEARLNRSTYV QLIEHALAGHGDELVVESLGQRFGLVPQP
Sequences:
>Translated_189_residues MPYVPPPELASLSLAEIAAQVAARKLPPLSQWTPQESGNSEMRIAADGRWYHQGGEIRRPAMVRAFSSLLMRDENGQHWL VTPFQRLSIEVDDAAFIATDMQARTDPEGRPALTFRLNSDDIVICGPEHRLRVGGTADLPAFYLAVRHGTEARLNRSTYV QLIEHALAGHGDELVVESLGQRFGLVPQP >Mature_188_residues PYVPPPELASLSLAEIAAQVAARKLPPLSQWTPQESGNSEMRIAADGRWYHQGGEIRRPAMVRAFSSLLMRDENGQHWLV TPFQRLSIEVDDAAFIATDMQARTDPEGRPALTFRLNSDDIVICGPEHRLRVGGTADLPAFYLAVRHGTEARLNRSTYVQ LIEHALAGHGDELVVESLGQRFGLVPQP
Specific function: Unknown
COG id: COG3816
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20918; Mature: 20787
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYVPPPELASLSLAEIAAQVAARKLPPLSQWTPQESGNSEMRIAADGRWYHQGGEIRRP CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCH AMVRAFSSLLMRDENGQHWLVTPFQRLSIEVDDAAFIATDMQARTDPEGRPALTFRLNSD HHHHHHHHHHHCCCCCCEEEECCHHHEEEEECCCEEEEECCCCCCCCCCCCEEEEEECCC DIVICGPEHRLRVGGTADLPAFYLAVRHGTEARLNRSTYVQLIEHALAGHGDELVVESLG CEEEECCCCEEEECCCCCCHHEEEEECCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHHH QRFGLVPQP HHCCCCCCC >Mature Secondary Structure PYVPPPELASLSLAEIAAQVAARKLPPLSQWTPQESGNSEMRIAADGRWYHQGGEIRRP CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCH AMVRAFSSLLMRDENGQHWLVTPFQRLSIEVDDAAFIATDMQARTDPEGRPALTFRLNSD HHHHHHHHHHHCCCCCCEEEECCHHHEEEEECCCEEEEECCCCCCCCCCCCEEEEEECCC DIVICGPEHRLRVGGTADLPAFYLAVRHGTEARLNRSTYVQLIEHALAGHGDELVVESLG CEEEECCCCEEEECCCCCCHHEEEEECCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHHH QRFGLVPQP HHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA