Click here to switch to the map view.

The map label for this gene is yngJ [H]

Identifier: 87199018

GI number: 87199018

Start: 1039072

End: 1040364

Strand: Reverse

Name: yngJ [H]

Synonym: Saro_0996

Alternate gene names: 87199018

Gene position: 1040364-1039072 (Counterclockwise)

Preceding gene: 87199019

Following gene: 87199017

Centisome position: 29.21

GC content: 66.13

Gene sequence:

>1293_bases
ATGGATTTCGAACCGACCGAGCGCCAGAAGTACTGGCGGGACCGCGTCCGCCAGTTCGTCGAGGACAACATCCGCCCGCG
CCATGGCGACTACAAGGCGGAAGCCGGCACGGCCGATCGCTGGAAGGTCATCCAGACCATCGAACAGGAAAAGGCCAGGG
CCAAGGCGGCCGGCATCTGGAACCTGTTCATGCCTCCGCGCAACAGCGGCCACCATCACGTCGACGAAACGTTCGCGTTC
GAAGGTCCGGGCCTGACCAACCTCGAATACGCGCTCTGCGCCGAGGAGATGGGCCGCATCGGCTGGGCCAGCGAAGTGTT
CAACTGCTCCGCGCCCGATACGGGCAACATGGAAGTGCTGCACCGCTACGGCACGCTGGAACAGAAGGAGCGCTGGCTGC
GCCCGCTGATGAACGGCGAGATCCGCTCTGCCTTCCTCATGACCGAGCCGCAGGTCGCATCGTCCGACGCGACGAACATC
GAGACCTCGATCCGCCGCGAAGGCGACGAATACGTGATCAACGGCCGCAAGTGGTGGTCGTCGGGCGCGGGCGATCCGCG
CTGCGAGATCGCCATCGTCATGGGCAAGACCGATTTCGAGGCAAAGCGTCACCAGCAGCAGTCGATGGTCCTGATGCCGC
TGGACGCGCCGGGCGTGAACATCATCCGTCACCTGCCCGTGTTCGGCTACGACGACGCGCCGCACGGCCACATGGAGATC
GAACTCAAGGACGTGCGCGTCCCGGTCACCAACATGCTGCTGGGCGAAGGCCGCGGATTCGAAATCGCGCAGGGCCGCCT
CGGGCCGGGCCGCATCCACCACTGCATGCGCACCATCGGCGTGGCCGAGGAAGCGATCGCCAAGATGGCACGGCGCCTCC
AGTCGCGCGTCGCCTTCGGCAAGCGCGTGTCCGAACAGTCGGTCTGGGAACAGCGCATCGCGCAGGCCCGCATCGACATC
GACATGACCCGCCTGCTTTGTCTCAAGGCAGCCGACATGATGGACAAGGTCGGCAACAAGGCCGCCGCGCTCGAAATCGC
GATGATCAAGGTCCAGGCGCCGAACATGGCCCTTCGCATTATCGACGACGCGATCCAGGCCCATGGCGGCGGCGGCGTCT
CGGCGGACTTCGGCCTTGCCGAAAGCTATGCCCACATGCGCACGCTGCGCCTGGCCGACGGACCGGACGAAGTCCACGCC
CGCGCAATCGCCCGCATCGAGTTTGCCCGCCATGCCGACATGCCGCAGGCCGACCGGGGCTTCAGCTCCGGCGACCTCGG
CGTGGCACGTTGA

Upstream 100 bases:

>100_bases
TCCTTGACATGGATCGGGCGCGCCCATTAACCGAACGCTTAATTTTGACTTGAAAACACCACAGGCCCGATGGACAGTGC
CGGGCGAGAAGGAGACGATC

Downstream 100 bases:

>100_bases
CGTTCAGGAGTAATCGCAGATGAAAGCCGCCGTACTCGTCGAACCGGGCAAGCCGCTGGATATTCAGCATCTCAGCGTGT
CCAAGCCCGGCCCGCATGAA

Product: acyl-CoA dehydrogenase-like protein

Products: 2,3-dehydroacyl-CoA; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MDFEPTERQKYWRDRVRQFVEDNIRPRHGDYKAEAGTADRWKVIQTIEQEKARAKAAGIWNLFMPPRNSGHHHVDETFAF
EGPGLTNLEYALCAEEMGRIGWASEVFNCSAPDTGNMEVLHRYGTLEQKERWLRPLMNGEIRSAFLMTEPQVASSDATNI
ETSIRREGDEYVINGRKWWSSGAGDPRCEIAIVMGKTDFEAKRHQQQSMVLMPLDAPGVNIIRHLPVFGYDDAPHGHMEI
ELKDVRVPVTNMLLGEGRGFEIAQGRLGPGRIHHCMRTIGVAEEAIAKMARRLQSRVAFGKRVSEQSVWEQRIAQARIDI
DMTRLLCLKAADMMDKVGNKAAALEIAMIKVQAPNMALRIIDDAIQAHGGGGVSADFGLAESYAHMRTLRLADGPDEVHA
RAIARIEFARHADMPQADRGFSSGDLGVAR

Sequences:

>Translated_430_residues
MDFEPTERQKYWRDRVRQFVEDNIRPRHGDYKAEAGTADRWKVIQTIEQEKARAKAAGIWNLFMPPRNSGHHHVDETFAF
EGPGLTNLEYALCAEEMGRIGWASEVFNCSAPDTGNMEVLHRYGTLEQKERWLRPLMNGEIRSAFLMTEPQVASSDATNI
ETSIRREGDEYVINGRKWWSSGAGDPRCEIAIVMGKTDFEAKRHQQQSMVLMPLDAPGVNIIRHLPVFGYDDAPHGHMEI
ELKDVRVPVTNMLLGEGRGFEIAQGRLGPGRIHHCMRTIGVAEEAIAKMARRLQSRVAFGKRVSEQSVWEQRIAQARIDI
DMTRLLCLKAADMMDKVGNKAAALEIAMIKVQAPNMALRIIDDAIQAHGGGGVSADFGLAESYAHMRTLRLADGPDEVHA
RAIARIEFARHADMPQADRGFSSGDLGVAR
>Mature_430_residues
MDFEPTERQKYWRDRVRQFVEDNIRPRHGDYKAEAGTADRWKVIQTIEQEKARAKAAGIWNLFMPPRNSGHHHVDETFAF
EGPGLTNLEYALCAEEMGRIGWASEVFNCSAPDTGNMEVLHRYGTLEQKERWLRPLMNGEIRSAFLMTEPQVASSDATNI
ETSIRREGDEYVINGRKWWSSGAGDPRCEIAIVMGKTDFEAKRHQQQSMVLMPLDAPGVNIIRHLPVFGYDDAPHGHMEI
ELKDVRVPVTNMLLGEGRGFEIAQGRLGPGRIHHCMRTIGVAEEAIAKMARRLQSRVAFGKRVSEQSVWEQRIAQARIDI
DMTRLLCLKAADMMDKVGNKAAALEIAMIKVQAPNMALRIIDDAIQAHGGGGVSADFGLAESYAHMRTLRLADGPDEVHA
RAIARIEFARHADMPQADRGFSSGDLGVAR

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI48976061, Length=407, Percent_Identity=54.5454545454545, Blast_Score=442, Evalue=1e-124,
Organism=Homo sapiens, GI211971008, Length=407, Percent_Identity=54.5454545454545, Blast_Score=442, Evalue=1e-124,
Organism=Homo sapiens, GI38505218, Length=400, Percent_Identity=53.75, Blast_Score=428, Evalue=1e-120,
Organism=Homo sapiens, GI4557233, Length=323, Percent_Identity=30.030959752322, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI4557231, Length=412, Percent_Identity=24.5145631067961, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI187960098, Length=412, Percent_Identity=24.5145631067961, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI4501859, Length=400, Percent_Identity=24, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI7656849, Length=287, Percent_Identity=27.5261324041812, Blast_Score=109, Evalue=6e-24,
Organism=Homo sapiens, GI226958412, Length=403, Percent_Identity=22.8287841191067, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI226958414, Length=341, Percent_Identity=24.633431085044, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI21361497, Length=361, Percent_Identity=25.7617728531856, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI76496475, Length=336, Percent_Identity=26.1904761904762, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI4557235, Length=336, Percent_Identity=26.1904761904762, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI4501857, Length=413, Percent_Identity=23.0024213075061, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI4503943, Length=329, Percent_Identity=23.4042553191489, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI7669494, Length=298, Percent_Identity=23.8255033557047, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI87081958, Length=411, Percent_Identity=26.0340632603406, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786223, Length=311, Percent_Identity=24.1157556270096, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562446, Length=402, Percent_Identity=51.9900497512438, Blast_Score=397, Evalue=1e-111,
Organism=Caenorhabditis elegans, GI17534899, Length=417, Percent_Identity=25.1798561151079, Blast_Score=121, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17505929, Length=342, Percent_Identity=26.3157894736842, Blast_Score=118, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI17551932, Length=341, Percent_Identity=26.099706744868, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17569725, Length=419, Percent_Identity=23.1503579952267, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71985184, Length=374, Percent_Identity=27.0053475935829, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17570075, Length=418, Percent_Identity=22.9665071770335, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17533517, Length=328, Percent_Identity=26.8292682926829, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17508101, Length=336, Percent_Identity=25.8928571428571, Blast_Score=105, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17506239, Length=402, Percent_Identity=23.8805970149254, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71990804, Length=254, Percent_Identity=28.3464566929134, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17538396, Length=328, Percent_Identity=23.1707317073171, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71982178, Length=234, Percent_Identity=27.3504273504274, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17534353, Length=330, Percent_Identity=22.7272727272727, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646207, Length=325, Percent_Identity=28.9230769230769, Blast_Score=118, Evalue=9e-27,
Organism=Drosophila melanogaster, GI21356377, Length=323, Percent_Identity=29.7213622291022, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI281363737, Length=366, Percent_Identity=27.8688524590164, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24660351, Length=404, Percent_Identity=24.7524752475248, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24666513, Length=332, Percent_Identity=25.6024096385542, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21355753, Length=294, Percent_Identity=25.1700680272109, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI19920834, Length=324, Percent_Identity=22.5308641975309, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.3

Molecular weight: Translated: 48194; Mature: 48194

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFEPTERQKYWRDRVRQFVEDNIRPRHGDYKAEAGTADRWKVIQTIEQEKARAKAAGIW
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEE
NLFMPPRNSGHHHVDETFAFEGPGLTNLEYALCAEEMGRIGWASEVFNCSAPDTGNMEVL
EEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHH
HRYGTLEQKERWLRPLMNGEIRSAFLMTEPQVASSDATNIETSIRREGDEYVINGRKWWS
HHHCCHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCCHHHHHHCCCCCEEECCCEECC
SGAGDPRCEIAIVMGKTDFEAKRHQQQSMVLMPLDAPGVNIIRHLPVFGYDDAPHGHMEI
CCCCCCCEEEEEEECCCCHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEE
ELKDVRVPVTNMLLGEGRGFEIAQGRLGPGRIHHCMRTIGVAEEAIAKMARRLQSRVAFG
EEEEEECCHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRVSEQSVWEQRIAQARIDIDMTRLLCLKAADMMDKVGNKAAALEIAMIKVQAPNMALRI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHHH
IDDAIQAHGGGGVSADFGLAESYAHMRTLRLADGPDEVHARAIARIEFARHADMPQADRG
HHHHHHHCCCCCCCCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCHHCC
FSSGDLGVAR
CCCCCCCCCC
>Mature Secondary Structure
MDFEPTERQKYWRDRVRQFVEDNIRPRHGDYKAEAGTADRWKVIQTIEQEKARAKAAGIW
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEE
NLFMPPRNSGHHHVDETFAFEGPGLTNLEYALCAEEMGRIGWASEVFNCSAPDTGNMEVL
EEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHH
HRYGTLEQKERWLRPLMNGEIRSAFLMTEPQVASSDATNIETSIRREGDEYVINGRKWWS
HHHCCHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCCHHHHHHCCCCCEEECCCEECC
SGAGDPRCEIAIVMGKTDFEAKRHQQQSMVLMPLDAPGVNIIRHLPVFGYDDAPHGHMEI
CCCCCCCEEEEEEECCCCHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEE
ELKDVRVPVTNMLLGEGRGFEIAQGRLGPGRIHHCMRTIGVAEEAIAKMARRLQSRVAFG
EEEEEECCHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRVSEQSVWEQRIAQARIDIDMTRLLCLKAADMMDKVGNKAAALEIAMIKVQAPNMALRI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHHH
IDDAIQAHGGGGVSADFGLAESYAHMRTLRLADGPDEVHARAIARIEFARHADMPQADRG
HHHHHHHCCCCCCCCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCHHCC
FSSGDLGVAR
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: acyl-CoA; acceptor

Specific reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]