| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is mucR [H]
Identifier: 87199007
GI number: 87199007
Start: 1028255
End: 1028692
Strand: Reverse
Name: mucR [H]
Synonym: Saro_0985
Alternate gene names: 87199007
Gene position: 1028692-1028255 (Counterclockwise)
Preceding gene: 87199008
Following gene: 87199006
Centisome position: 28.88
GC content: 60.5
Gene sequence:
>438_bases ATGACTGAAATCCAGAACGACATGCGTGAAACGCTCATCACGCTCACATCTGATATCGTCGCAGCACATGTCAGCAACAA CAGCGTGGCTGTGAGCGACCTGCCCACGCTGATCACGAATGTCTATTCGGCGCTCGCCGGACTGGATCAGCCAGCACCCG CCGAAGAACCGGCGCCGGAACCGGCAGTTTCGATCCGCTCTTCCGTGAAGAACGATCACATCGTCTGCCTCGAAGACGGC AAGAAACTGAAGATGCTCAAGCGTCATCTTGCAACGCGCTACAACATGACCCCCGAACAGTATCGCGCTCGCTGGAACCT TCCTGCCGACTACCCGATGGTCGCGCCGGCATATGCCGAGAAGCGCCGCGAACTGGCCAAGAAGATCGGCCTCGGCCGCA AGCCCGCGCCGAAGCGCGCGCGCAAGGCCGCGTCCTGA
Upstream 100 bases:
>100_bases TCTAAGCAAAATAACGACTACTGCGAATGTCGCTACAGGTCTACCCAAAGACTCGGACATGCATTTGCTCAATTGAGCCA AAAGAGAAGGTCGCATCCCA
Downstream 100 bases:
>100_bases TCCACGCGCCCCACAGGATTGCGCGCAATCGTATAGCGTGCGGTTGAAGATTCGGCCCGCCCGACTATAGATCGGCGGGC CGAATTGTTTTTGTAGGACC
Product: MucR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MTEIQNDMRETLITLTSDIVAAHVSNNSVAVSDLPTLITNVYSALAGLDQPAPAEEPAPEPAVSIRSSVKNDHIVCLEDG KKLKMLKRHLATRYNMTPEQYRARWNLPADYPMVAPAYAEKRRELAKKIGLGRKPAPKRARKAAS
Sequences:
>Translated_145_residues MTEIQNDMRETLITLTSDIVAAHVSNNSVAVSDLPTLITNVYSALAGLDQPAPAEEPAPEPAVSIRSSVKNDHIVCLEDG KKLKMLKRHLATRYNMTPEQYRARWNLPADYPMVAPAYAEKRRELAKKIGLGRKPAPKRARKAAS >Mature_144_residues TEIQNDMRETLITLTSDIVAAHVSNNSVAVSDLPTLITNVYSALAGLDQPAPAEEPAPEPAVSIRSSVKNDHIVCLEDGK KLKMLKRHLATRYNMTPEQYRARWNLPADYPMVAPAYAEKRRELAKKIGLGRKPAPKRARKAAS
Specific function: Regulator of exopolysaccharide synthesis. Represses the activation of EPS II (exp) genes for galactoglucan and activates the EPS I (exo) genes for succinoglycan. Also negatively regulates its own transcription [H]
COG id: COG4957
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ros/mucR family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008807 - InterPro: IPR015880 [H]
Pfam domain/function: PF05443 ROS_MUCR [H]
EC number: NA
Molecular weight: Translated: 16033; Mature: 15901
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEIQNDMRETLITLTSDIVAAHVSNNSVAVSDLPTLITNVYSALAGLDQPAPAEEPAPE CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PAVSIRSSVKNDHIVCLEDGKKLKMLKRHLATRYNMTPEQYRARWNLPADYPMVAPAYAE HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHH KRRELAKKIGLGRKPAPKRARKAAS HHHHHHHHHCCCCCCCHHHHHCCCC >Mature Secondary Structure TEIQNDMRETLITLTSDIVAAHVSNNSVAVSDLPTLITNVYSALAGLDQPAPAEEPAPE CHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PAVSIRSSVKNDHIVCLEDGKKLKMLKRHLATRYNMTPEQYRARWNLPADYPMVAPAYAE HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHH KRRELAKKIGLGRKPAPKRARKAAS HHHHHHHHHCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7756693; 10656595; 11481430 [H]