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The map label for this gene is rarD [C]

Identifier: 87198958

GI number: 87198958

Start: 983841

End: 984728

Strand: Reverse

Name: rarD [C]

Synonym: Saro_0936

Alternate gene names: 87198958

Gene position: 984728-983841 (Counterclockwise)

Preceding gene: 87198961

Following gene: 87198956

Centisome position: 27.65

GC content: 66.89

Gene sequence:

>888_bases
ATGAACCATTCGTCGACCTTCCGGCGGGGCCTGACAGCCGCCGTTGCCGCCTATGTCGCCTGGGGACTACTGCCGCTCTA
CTTCCGCGCGCTGCACGACGTCCCACCTGTGGAGTTGATCGGCTGGCGAATCCTGTTCACGCTGCCCGTCTGCCTCGTCA
TCGTGGCCGCGCGTCGCCAGGGGCCGGACGTGCGCGCAGCCTTCGCCAATCCGCGTGTGCTGTTGCAACTCGCCATCAGT
GCCGCGCTGATCGGGGCGAACTGGCTGATCTTCGTGATCGCCATCAACGAGGGCCACGTCCTAGCCACCAGCCTGGGCTA
CTACATCAATCCCCTGATCAACGTGCTCCTGGGCACGATGCTGCTGGGGGAACGTCTCTCGCGCGTGCAGTGGACTGCGG
TCGGGCTGGCTGGCGCGGGCATCGCGCTGCTGCTGGCCGGAGCGCTCGATACGCTGATCGTGGCGATGTCGCTCGCCCTC
ACCTTTGCCTTCTACGGCTACGTCCGCAAGAAGGCGCCGGTCGGATCGGTTCCTGGACTTACGGTCGAAACCGCATTGCT
GGCGCTTCCCGCGCTCGTCGTCGTGTGGATATGGGCGGGCTCGCCGGCAGGGTCGAGCATGGCGCCGGGCAGCCCTTCGG
CGCTCCTGCTCGCTTTCTCGGGTGTGGCAACGGCCATTCCGCTGCTGCTGTTCGCCGTCGCGGCCCGGGCGCTGCCGCTT
TCAACCCTGGGCTTCGTCCAGTTCATCGCGCCGACGATAAGCTTCACCCTCGGCCTGACGGTCTTCGGCGAGAGCCTCGA
TCCGGCAAGGCTCGGCTGCTTCGCGCTGATCTGGTCGGCCATCGCGCTCTATAGCTGGGACATGCTACGCCGCGCCCGGT
CGGCCTGA

Upstream 100 bases:

>100_bases
CGTCAGATTCGCGTTTTGCGACAAGCCGTTGGCTGACGCCGTCGAAACGGTTGGACGACAAGGGGTTGGCGCTTTGGCGC
AATGCTGGCAGGGGGCCGGG

Downstream 100 bases:

>100_bases
CGGTCAGGCCGCGGCGATTCGCCAGCCGAGCGTCTCACCGGCGTGGAAGGGCACGATTGCGGTGCCGTTGCAGTCGATCA
CCTCAGGCACCTCGATGGGC

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNHSSTFRRGLTAAVAAYVAWGLLPLYFRALHDVPPVELIGWRILFTLPVCLVIVAARRQGPDVRAAFANPRVLLQLAIS
AALIGANWLIFVIAINEGHVLATSLGYYINPLINVLLGTMLLGERLSRVQWTAVGLAGAGIALLLAGALDTLIVAMSLAL
TFAFYGYVRKKAPVGSVPGLTVETALLALPALVVVWIWAGSPAGSSMAPGSPSALLLAFSGVATAIPLLLFAVAARALPL
STLGFVQFIAPTISFTLGLTVFGESLDPARLGCFALIWSAIALYSWDMLRRARSA

Sequences:

>Translated_295_residues
MNHSSTFRRGLTAAVAAYVAWGLLPLYFRALHDVPPVELIGWRILFTLPVCLVIVAARRQGPDVRAAFANPRVLLQLAIS
AALIGANWLIFVIAINEGHVLATSLGYYINPLINVLLGTMLLGERLSRVQWTAVGLAGAGIALLLAGALDTLIVAMSLAL
TFAFYGYVRKKAPVGSVPGLTVETALLALPALVVVWIWAGSPAGSSMAPGSPSALLLAFSGVATAIPLLLFAVAARALPL
STLGFVQFIAPTISFTLGLTVFGESLDPARLGCFALIWSAIALYSWDMLRRARSA
>Mature_295_residues
MNHSSTFRRGLTAAVAAYVAWGLLPLYFRALHDVPPVELIGWRILFTLPVCLVIVAARRQGPDVRAAFANPRVLLQLAIS
AALIGANWLIFVIAINEGHVLATSLGYYINPLINVLLGTMLLGERLSRVQWTAVGLAGAGIALLLAGALDTLIVAMSLAL
TFAFYGYVRKKAPVGSVPGLTVETALLALPALVVVWIWAGSPAGSSMAPGSPSALLLAFSGVATAIPLLLFAVAARALPL
STLGFVQFIAPTISFTLGLTVFGESLDPARLGCFALIWSAIALYSWDMLRRARSA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=294, Percent_Identity=40.4761904761905, Blast_Score=207, Evalue=5e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31146; Mature: 31146

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHSSTFRRGLTAAVAAYVAWGLLPLYFRALHDVPPVELIGWRILFTLPVCLVIVAARRQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
GPDVRAAFANPRVLLQLAISAALIGANWLIFVIAINEGHVLATSLGYYINPLINVLLGTM
CCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHH
LLGERLSRVQWTAVGLAGAGIALLLAGALDTLIVAMSLALTFAFYGYVRKKAPVGSVPGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TVETALLALPALVVVWIWAGSPAGSSMAPGSPSALLLAFSGVATAIPLLLFAVAARALPL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
STLGFVQFIAPTISFTLGLTVFGESLDPARLGCFALIWSAIALYSWDMLRRARSA
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNHSSTFRRGLTAAVAAYVAWGLLPLYFRALHDVPPVELIGWRILFTLPVCLVIVAARRQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
GPDVRAAFANPRVLLQLAISAALIGANWLIFVIAINEGHVLATSLGYYINPLINVLLGTM
CCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHH
LLGERLSRVQWTAVGLAGAGIALLLAGALDTLIVAMSLALTFAFYGYVRKKAPVGSVPGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TVETALLALPALVVVWIWAGSPAGSSMAPGSPSALLLAFSGVATAIPLLLFAVAARALPL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
STLGFVQFIAPTISFTLGLTVFGESLDPARLGCFALIWSAIALYSWDMLRRARSA
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]