| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198929
Identifier: 87198929
GI number: 87198929
Start: 961272
End: 962387
Strand: Reverse
Name: 87198929
Synonym: Saro_0907
Alternate gene names: NA
Gene position: 962387-961272 (Counterclockwise)
Preceding gene: 87198930
Following gene: 87198928
Centisome position: 27.02
GC content: 70.25
Gene sequence:
>1116_bases ATGGCCCGCAAGTTCCTTTACCTAATCGCCGTGCTCGCCGTCATCGTCATCGCGGCCATGTTCGCCCTGCGTATCTGGTC GAACGAGCTCACGCGCTTCGCCTTCGTCCCGCGCGCCGCGTTCGAGCGCCTCGACCCTCCGGCGGCGGGGGCCTATCTCA GCCGCGACATGTGGATCTCGCGGCCCGATTTCGGCACCGGCGATCCCGCGCAATGGGCTCCCGCCGGCGTGCGTCGCGGC GAAGGACGCGCTGCCGTGTTCTTCGTCCACCCGACCAGCTACCTCGCCCGCGAACACTGGAACGGGCCGCTGGACGATAC CGACGCCCGCCGCCGCGCGGGGTACTTCGTGCAAGGCATGGCCAGCGCGTTCAACGGACAGGCGCAAGTCTGGGCGCCGC GCTATCGCCAGGCCGCGTTCGGCGCGTTCCTGACCGACAAGCCCGAAGGCCAGCAGGCGCTCGACACCGCCTACGTCGAC GTGCTGCGCGCCTTCGACGCGTTCCTCGCCGCCATTCCGGCGGATACGCCGATCGTCCTTGCCGGCCACAGCCAGGGCGC GCTCCACCTCATGCAGCTGCTGAAGGATCGCGTCGCGGGCAAGCCGCTCGCCCGCCGGATCGTCGCCGCCTATCCCATCG GCTGGCCGATCTCTATCCAGCACGATCTGCCCGCGATGGGCCTGCCGGCCTGCGCCGCACCCGACCAGCAGGGCTGCATC GTGAGCTGGTCCAGCTTTGCCGAGCCAGCCGATCCGACGCTCGTCCTTGAAGCCTATCGCGCCCGCCCCGCCCTCGACGG CAAGGCCAAGGGCACCGAGCCTGTTCTCTGCACGAACCCCCTCACCGGCCGCACCGGCGGCAGCGCGCCCGCATCCGCCA ACCTCGGCACACTTCACCCAGCCGATGAACTCGACGGCGGCGAGATCATCCGTCAGGCCGTGCCGGCACGATGCGACGAG GCCACCGGCCTGCTGATGATCGGCAGCCCACCCGACCTCGGCCCCTTCGTGCTGCCGGGCAACAACTACCACGTCTACGA CATCCCGCTGTTCTGGACGAACCTGCGCGAAGACGTCGCGCGGCGGGTCAGGGCGTGGAGCGCGGCCGCGCGGTGA
Upstream 100 bases:
>100_bases CCTGATGCTCGCCGATCCGATCATCGCCATGCTCAAGATCGCGCTCGAACGGCAGGCAGAGCGCAACGACGCCAATCGCG TCGCCGACCAGGGATAGCCC
Downstream 100 bases:
>100_bases TCACCCAGTCCGCCCTCGAGATGCGCGATGCCCTGGCCGAAGGCGGCAGCCTGATCGGCCTCGACACCGGCACGAAGACC ATCGGCGTCGCCCTGTGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 371; Mature: 370
Protein sequence:
>371_residues MARKFLYLIAVLAVIVIAAMFALRIWSNELTRFAFVPRAAFERLDPPAAGAYLSRDMWISRPDFGTGDPAQWAPAGVRRG EGRAAVFFVHPTSYLAREHWNGPLDDTDARRRAGYFVQGMASAFNGQAQVWAPRYRQAAFGAFLTDKPEGQQALDTAYVD VLRAFDAFLAAIPADTPIVLAGHSQGALHLMQLLKDRVAGKPLARRIVAAYPIGWPISIQHDLPAMGLPACAAPDQQGCI VSWSSFAEPADPTLVLEAYRARPALDGKAKGTEPVLCTNPLTGRTGGSAPASANLGTLHPADELDGGEIIRQAVPARCDE ATGLLMIGSPPDLGPFVLPGNNYHVYDIPLFWTNLREDVARRVRAWSAAAR
Sequences:
>Translated_371_residues MARKFLYLIAVLAVIVIAAMFALRIWSNELTRFAFVPRAAFERLDPPAAGAYLSRDMWISRPDFGTGDPAQWAPAGVRRG EGRAAVFFVHPTSYLAREHWNGPLDDTDARRRAGYFVQGMASAFNGQAQVWAPRYRQAAFGAFLTDKPEGQQALDTAYVD VLRAFDAFLAAIPADTPIVLAGHSQGALHLMQLLKDRVAGKPLARRIVAAYPIGWPISIQHDLPAMGLPACAAPDQQGCI VSWSSFAEPADPTLVLEAYRARPALDGKAKGTEPVLCTNPLTGRTGGSAPASANLGTLHPADELDGGEIIRQAVPARCDE ATGLLMIGSPPDLGPFVLPGNNYHVYDIPLFWTNLREDVARRVRAWSAAAR >Mature_370_residues ARKFLYLIAVLAVIVIAAMFALRIWSNELTRFAFVPRAAFERLDPPAAGAYLSRDMWISRPDFGTGDPAQWAPAGVRRGE GRAAVFFVHPTSYLAREHWNGPLDDTDARRRAGYFVQGMASAFNGQAQVWAPRYRQAAFGAFLTDKPEGQQALDTAYVDV LRAFDAFLAAIPADTPIVLAGHSQGALHLMQLLKDRVAGKPLARRIVAAYPIGWPISIQHDLPAMGLPACAAPDQQGCIV SWSSFAEPADPTLVLEAYRARPALDGKAKGTEPVLCTNPLTGRTGGSAPASANLGTLHPADELDGGEIIRQAVPARCDEA TGLLMIGSPPDLGPFVLPGNNYHVYDIPLFWTNLREDVARRVRAWSAAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40165; Mature: 40034
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: PS00300 SRP54
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKFLYLIAVLAVIVIAAMFALRIWSNELTRFAFVPRAAFERLDPPAAGAYLSRDMWIS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHCCCEEC RPDFGTGDPAQWAPAGVRRGEGRAAVFFVHPTSYLAREHWNGPLDDTDARRRAGYFVQGM CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCHHHHHHCHHHHHH ASAFNGQAQVWAPRYRQAAFGAFLTDKPEGQQALDTAYVDVLRAFDAFLAAIPADTPIVL HHHHCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE AGHSQGALHLMQLLKDRVAGKPLARRIVAAYPIGWPISIQHDLPAMGLPACAAPDQQGCI ECCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCE VSWSSFAEPADPTLVLEAYRARPALDGKAKGTEPVLCTNPLTGRTGGSAPASANLGTLHP EEHHCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC ADELDGGEIIRQAVPARCDEATGLLMIGSPPDLGPFVLPGNNYHVYDIPLFWTNLREDVA CCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCCEEEEECCHHHHHHHHHHH RRVRAWSAAAR HHHHHHHHCCC >Mature Secondary Structure ARKFLYLIAVLAVIVIAAMFALRIWSNELTRFAFVPRAAFERLDPPAAGAYLSRDMWIS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHCCCEEC RPDFGTGDPAQWAPAGVRRGEGRAAVFFVHPTSYLAREHWNGPLDDTDARRRAGYFVQGM CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCHHHHHHCHHHHHH ASAFNGQAQVWAPRYRQAAFGAFLTDKPEGQQALDTAYVDVLRAFDAFLAAIPADTPIVL HHHHCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE AGHSQGALHLMQLLKDRVAGKPLARRIVAAYPIGWPISIQHDLPAMGLPACAAPDQQGCI ECCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCE VSWSSFAEPADPTLVLEAYRARPALDGKAKGTEPVLCTNPLTGRTGGSAPASANLGTLHP EEHHCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC ADELDGGEIIRQAVPARCDEATGLLMIGSPPDLGPFVLPGNNYHVYDIPLFWTNLREDVA CCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCCEEEEECCHHHHHHHHHHH RRVRAWSAAAR HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA