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The map label for this gene is yqgF [C]

Identifier: 87198928

GI number: 87198928

Start: 960808

End: 961275

Strand: Reverse

Name: yqgF [C]

Synonym: Saro_0906

Alternate gene names: 87198928

Gene position: 961275-960808 (Counterclockwise)

Preceding gene: 87198929

Following gene: 87198927

Centisome position: 26.99

GC content: 68.16

Gene sequence:

>468_bases
GTGATCACCCAGTCCGCCCTCGAGATGCGCGATGCCCTGGCCGAAGGCGGCAGCCTGATCGGCCTCGACACCGGCACGAA
GACCATCGGCGTCGCCCTGTGCGACCGCGAATGGCGCTTCGCTACGGCCGGAACCACCATCCGCCGCACCAAGTTTGCCG
CCGACAAGGCCCAGATCCGCGCCATTGTCGCCGAGCGCGGCGTCAAGGGAATCGTCATCGGCCTGCCGCTCAACATGGAC
GGCTCCGAAAGCCCCCGCTCGCAGGGGGCCCGGGCCATGGCGCGCAATCTCGAGGATCTCGGCCTGCCGATCCTCTTGTG
GGACGAACGCTGGACGACCCAGGCTGCCGAACGCGCGATGATCGAACAGGACTTCAGCCGGGCGAAGCGGGCCGAGCGAA
TCGATTCGCACGCCGCCGCGCTGATCCTCCAGGGCGCCATCGACGCGCTGGCCGGAAGCGCATTTTAA

Upstream 100 bases:

>100_bases
TGCCGGGCAACAACTACCACGTCTACGACATCCCGCTGTTCTGGACGAACCTGCGCGAAGACGTCGCGCGGCGGGTCAGG
GCGTGGAGCGCGGCCGCGCG

Downstream 100 bases:

>100_bases
CCATGCACTTAATGCGCTTGTAATCCCTGCCGTGCTGCGGCAGGGATTCCTCCATGGATAGCAACCCGGAAAGCACCGGA
GGCCGCCCGGCCATCCCGCC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MITQSALEMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIRAIVAERGVKGIVIGLPLNMD
GSESPRSQGARAMARNLEDLGLPILLWDERWTTQAAERAMIEQDFSRAKRAERIDSHAAALILQGAIDALAGSAF

Sequences:

>Translated_155_residues
MITQSALEMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIRAIVAERGVKGIVIGLPLNMD
GSESPRSQGARAMARNLEDLGLPILLWDERWTTQAAERAMIEQDFSRAKRAERIDSHAAALILQGAIDALAGSAF
>Mature_155_residues
MITQSALEMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIRAIVAERGVKGIVIGLPLNMD
GSESPRSQGARAMARNLEDLGLPILLWDERWTTQAAERAMIEQDFSRAKRAERIDSHAAALILQGAIDALAGSAF

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=34.5864661654135, Blast_Score=71, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_NOVAD (Q2G9X2)

Other databases:

- EMBL:   CP000248
- RefSeq:   YP_496185.1
- ProteinModelPortal:   Q2G9X2
- SMR:   Q2G9X2
- STRING:   Q2G9X2
- GeneID:   3917992
- GenomeReviews:   CP000248_GR
- KEGG:   nar:Saro_0906
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q2G9X2
- ProtClustDB:   PRK00109
- BioCyc:   NARO279238:SARO_0906-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16695; Mature: 16695

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITQSALEMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIR
CCCHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHH
AIVAERGVKGIVIGLPLNMDGSESPRSQGARAMARNLEDLGLPILLWDERWTTQAAERAM
HHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
IEQDFSRAKRAERIDSHAAALILQGAIDALAGSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MITQSALEMRDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIR
CCCHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHH
AIVAERGVKGIVIGLPLNMDGSESPRSQGARAMARNLEDLGLPILLWDERWTTQAAERAM
HHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
IEQDFSRAKRAERIDSHAAALILQGAIDALAGSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA