| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is yfeW [C]
Identifier: 87198892
GI number: 87198892
Start: 924792
End: 926024
Strand: Reverse
Name: yfeW [C]
Synonym: Saro_0870
Alternate gene names: 87198892
Gene position: 926024-924792 (Counterclockwise)
Preceding gene: 87198893
Following gene: 87198891
Centisome position: 26.0
GC content: 65.04
Gene sequence:
>1233_bases ATGGACCTTGCCGACCCGCAGACGCTCGGTTTCGATGCGTCCCGGCTGGAGCGCATCGCCGCATTCCTGGACGAGCAGTA TGTCGACAGCGGACGCCTGCCCGGGCTCGACGTTCTGGTCGCGCGCGATGGCGATGCGGTCTATCGCCACACCAGCGGAC GTGCGCGCGAGGATGGTACGCCGATGGCGCCGGACACGATCCATCGCATCGCCTCGATGACCAAGCCGCTGACGTCGGTG GCATTCATGATGCTGGTCGAGGAAGGCAAGGTCGCGCTCGACGACCCGGTGACCAAGGTCATCCCGGAGTTCGCGAACCT TGGCGTCTATGCCGGCGGCGGCGGAGAAGTGGACTTCTTTCCTTCGCGCCCCGCAGCGACCATGCGCATGGTCGACGTGA TCAGCCATCAATCCGGCCTGACCTATGGCATCCAGAACCGGACCAACGTGGATGCCGCCTATCGCAAGGCACGCCTCGAC GGCCACGCGAGCCTGCCGGGCAACGACCATTTCATCGAGGAACTGGCCAGGCTGCCGCTGGAGTTCGAACCGGGTCAGGG CTGGAACTATTCGGTCGGCACCGACGTGCTGGGCGTGATCGTTGCGCGGCTTTCGGGGATGAGCCTTGGCGAGTTCCTGA AGAGCCGCATTCTCGATCCGCTAGGCATGGTGGATACCGCCTTCCATTGCCCCGACGATAAGGCGCACCGGCTAGCCGAC GCCTGGGCGTACAAGGCCGGCGAGCGGCCGCAGCTTTTCGATCCTGCCGAGAAGTCCGGCACCCGGCGCGTGCCGCGCTT CGAGAGCGGCGGTGGCGGGCTGCTGTCGACGACCAGCGACTACCACCGCTTCTGCCGGATGCTGGTGAACGGCGGCAGCG CCGACGGTGCGCGCATCCTGAGCCCGAAGACCATTCATTTGATGACAGCCAACCACCTGCCGAACGGGGCCGACCTCACG CAGGTTTCGCGCGCGCTGTTCAGCGAAGCCTACAATGCGGGCGCGGGCTTCGGCCTTGGCTTCGGCATGACGATCGACCC GGCGCGGGCGCTGGTGCCGGGGTCCGCAGGCGAGTTCTACTGGGGTGGAATATTCTCAACCGCGTTTTTCGTGGACCCGG TGGAAAAGGTCCATGCGGTTTTCATGACCCAGCTCTATCCCTCGTTCATCTATCCCATCCGGCGTCAGTTGAAGACGCTG ATCTACAGCGCGCTGACGGAAAGCCGCGCCTGA
Upstream 100 bases:
>100_bases GGTTTCAGCAGCGAGACGCTGCGGATGTGGAACGCCGATGGCGTGGAAGTGATGCGCGGGCTCCAGAGCGTCGCGATCTT TGGCTGACGGAGAGATAGAG
Downstream 100 bases:
>100_bases CAACTGCCTAGGAGAAACGACGATGTCCGACCCCATTCCCGGCGCCAAGGAGCACATCGACGCGGCGCGCAAGCTTGCCG CGACCATCGATGACATCCCG
Product: beta-lactamase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 410
Protein sequence:
>410_residues MDLADPQTLGFDASRLERIAAFLDEQYVDSGRLPGLDVLVARDGDAVYRHTSGRAREDGTPMAPDTIHRIASMTKPLTSV AFMMLVEEGKVALDDPVTKVIPEFANLGVYAGGGGEVDFFPSRPAATMRMVDVISHQSGLTYGIQNRTNVDAAYRKARLD GHASLPGNDHFIEELARLPLEFEPGQGWNYSVGTDVLGVIVARLSGMSLGEFLKSRILDPLGMVDTAFHCPDDKAHRLAD AWAYKAGERPQLFDPAEKSGTRRVPRFESGGGGLLSTTSDYHRFCRMLVNGGSADGARILSPKTIHLMTANHLPNGADLT QVSRALFSEAYNAGAGFGLGFGMTIDPARALVPGSAGEFYWGGIFSTAFFVDPVEKVHAVFMTQLYPSFIYPIRRQLKTL IYSALTESRA
Sequences:
>Translated_410_residues MDLADPQTLGFDASRLERIAAFLDEQYVDSGRLPGLDVLVARDGDAVYRHTSGRAREDGTPMAPDTIHRIASMTKPLTSV AFMMLVEEGKVALDDPVTKVIPEFANLGVYAGGGGEVDFFPSRPAATMRMVDVISHQSGLTYGIQNRTNVDAAYRKARLD GHASLPGNDHFIEELARLPLEFEPGQGWNYSVGTDVLGVIVARLSGMSLGEFLKSRILDPLGMVDTAFHCPDDKAHRLAD AWAYKAGERPQLFDPAEKSGTRRVPRFESGGGGLLSTTSDYHRFCRMLVNGGSADGARILSPKTIHLMTANHLPNGADLT QVSRALFSEAYNAGAGFGLGFGMTIDPARALVPGSAGEFYWGGIFSTAFFVDPVEKVHAVFMTQLYPSFIYPIRRQLKTL IYSALTESRA >Mature_410_residues MDLADPQTLGFDASRLERIAAFLDEQYVDSGRLPGLDVLVARDGDAVYRHTSGRAREDGTPMAPDTIHRIASMTKPLTSV AFMMLVEEGKVALDDPVTKVIPEFANLGVYAGGGGEVDFFPSRPAATMRMVDVISHQSGLTYGIQNRTNVDAAYRKARLD GHASLPGNDHFIEELARLPLEFEPGQGWNYSVGTDVLGVIVARLSGMSLGEFLKSRILDPLGMVDTAFHCPDDKAHRLAD AWAYKAGERPQLFDPAEKSGTRRVPRFESGGGGLLSTTSDYHRFCRMLVNGGSADGARILSPKTIHLMTANHLPNGADLT QVSRALFSEAYNAGAGFGLGFGMTIDPARALVPGSAGEFYWGGIFSTAFFVDPVEKVHAVFMTQLYPSFIYPIRRQLKTL IYSALTESRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082101, Length=422, Percent_Identity=24.4075829383886, Blast_Score=94, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 44540; Mature: 44540
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLADPQTLGFDASRLERIAAFLDEQYVDSGRLPGLDVLVARDGDAVYRHTSGRAREDGT CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCCCC PMAPDTIHRIASMTKPLTSVAFMMLVEEGKVALDDPVTKVIPEFANLGVYAGGGGEVDFF CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHCCEEECCCCCCCCC PSRPAATMRMVDVISHQSGLTYGIQNRTNVDAAYRKARLDGHASLPGNDHFIEELARLPL CCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC EFEPGQGWNYSVGTDVLGVIVARLSGMSLGEFLKSRILDPLGMVDTAFHCPDDKAHRLAD EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHH AWAYKAGERPQLFDPAEKSGTRRVPRFESGGGGLLSTTSDYHRFCRMLVNGGSADGARIL HHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEC SPKTIHLMTANHLPNGADLTQVSRALFSEAYNAGAGFGLGFGMTIDPARALVPGSAGEFY CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCHHHHCCCCCCCCE WGGIFSTAFFVDPVEKVHAVFMTQLYPSFIYPIRRQLKTLIYSALTESRA EHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDLADPQTLGFDASRLERIAAFLDEQYVDSGRLPGLDVLVARDGDAVYRHTSGRAREDGT CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCCCC PMAPDTIHRIASMTKPLTSVAFMMLVEEGKVALDDPVTKVIPEFANLGVYAGGGGEVDFF CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHCCEEECCCCCCCCC PSRPAATMRMVDVISHQSGLTYGIQNRTNVDAAYRKARLDGHASLPGNDHFIEELARLPL CCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC EFEPGQGWNYSVGTDVLGVIVARLSGMSLGEFLKSRILDPLGMVDTAFHCPDDKAHRLAD EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHH AWAYKAGERPQLFDPAEKSGTRRVPRFESGGGGLLSTTSDYHRFCRMLVNGGSADGARIL HHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEC SPKTIHLMTANHLPNGADLTQVSRALFSEAYNAGAGFGLGFGMTIDPARALVPGSAGEFY CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCHHHHCCCCCCCCE WGGIFSTAFFVDPVEKVHAVFMTQLYPSFIYPIRRQLKTLIYSALTESRA EHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]